Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   AVT04_RS03050 Genome accession   NZ_CP013939
Coordinates   580289..580951 (-) Length   220 a.a.
NCBI ID   WP_002949747.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 575289..585951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS03040 (AVT04_03040) - 578679..579632 (+) 954 WP_041826943.1 IS30 family transposase -
  AVT04_RS03045 (AVT04_03045) hpf 579662..580210 (-) 549 WP_011225518.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AVT04_RS03050 (AVT04_03050) comFC/cflB 580289..580951 (-) 663 WP_002949747.1 ComF family protein Machinery gene
  AVT04_RS03055 (AVT04_03055) comFA/cflA 580932..582251 (-) 1320 WP_011226886.1 DEAD/DEAH box helicase Machinery gene
  AVT04_RS03060 (AVT04_03060) - 582306..582932 (+) 627 WP_002949745.1 YigZ family protein -
  AVT04_RS03065 (AVT04_03065) cysK 583034..583960 (+) 927 WP_002947179.1 cysteine synthase A -
  AVT04_RS09780 - 584127..584787 (-) 661 Protein_587 CBS and ACT domain-containing protein -
  AVT04_RS03080 (AVT04_03080) - 584923..585633 (-) 711 WP_002947183.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26037.39 Da        Isoelectric Point: 8.9833

>NTDB_id=143196 AVT04_RS03050 WP_002949747.1 580289..580951(-) (comFC/cflB) [Streptococcus thermophilus strain S9]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=143196 AVT04_RS03050 WP_002949747.1 580289..580951(-) (comFC/cflB) [Streptococcus thermophilus strain S9]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTACTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAAAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441