Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   AVT04_RS01320 Genome accession   NZ_CP013939
Coordinates   249160..249807 (+) Length   215 a.a.
NCBI ID   WP_002950388.1    Uniprot ID   Q5M4Y9
Organism   Streptococcus thermophilus strain S9     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 244160..254807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS01290 (AVT04_01290) - 244445..244717 (-) 273 WP_002950398.1 DUF3165 family protein -
  AVT04_RS01295 (AVT04_01295) typA 244741..246588 (-) 1848 WP_011227074.1 translational GTPase TypA -
  AVT04_RS01300 (AVT04_01300) - 246726..247694 (-) 969 WP_011225772.1 ROK family glucokinase -
  AVT04_RS01305 (AVT04_01305) - 247687..247893 (-) 207 WP_002950395.1 YqgQ family protein -
  AVT04_RS01310 (AVT04_01310) - 248004..248441 (-) 438 WP_011227072.1 Fur family transcriptional regulator -
  AVT04_RS01315 (AVT04_01315) - 248530..249051 (-) 522 WP_011225768.1 Dps family protein -
  AVT04_RS01320 (AVT04_01320) cclA/cilC 249160..249807 (+) 648 WP_002950388.1 prepilin peptidase Machinery gene
  AVT04_RS01325 (AVT04_01325) - 249847..251226 (-) 1380 WP_082302965.1 serine hydrolase -
  AVT04_RS01330 (AVT04_01330) sodA 251323..251928 (-) 606 WP_011680996.1 superoxide dismutase SodA -
  AVT04_RS01335 (AVT04_01335) holA 252023..253057 (-) 1035 WP_011227067.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24887.00 Da        Isoelectric Point: 8.3836

>NTDB_id=143179 AVT04_RS01320 WP_002950388.1 249160..249807(+) (cclA/cilC) [Streptococcus thermophilus strain S9]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=143179 AVT04_RS01320 WP_002950388.1 249160..249807(+) (cclA/cilC) [Streptococcus thermophilus strain S9]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M4Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386