Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WR52_RS11925 Genome accession   NZ_CP011155
Coordinates   2354977..2355255 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain HN001     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2349977..2360255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WR52_RS30585 - 2350060..2351402 (+) 1343 WP_154818483.1 IS3 family transposase -
  WR52_RS11905 (WR52_12190) - 2351656..2352465 (+) 810 WP_063536371.1 papain-like cysteine protease family protein -
  WR52_RS11910 (WR52_12195) - 2352491..2353093 (+) 603 WP_063536372.1 hypothetical protein -
  WR52_RS11915 (WR52_12200) - 2353283..2353534 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  WR52_RS11920 (WR52_12205) - 2353911..2354789 (+) 879 WP_000397979.1 helix-turn-helix domain-containing protein -
  WR52_RS11925 (WR52_12210) abrB 2354977..2355255 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  WR52_RS11930 (WR52_12215) - 2355871..2357121 (+) 1251 WP_063536373.1 hypothetical protein -
  WR52_RS11935 (WR52_12220) - 2357189..2357947 (+) 759 WP_000347994.1 TSUP family transporter -
  WR52_RS11940 (WR52_12225) - 2358201..2358860 (+) 660 WP_000876933.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=142989 WR52_RS11925 WP_000842216.1 2354977..2355255(+) (abrB) [Bacillus cereus strain HN001]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=142989 WR52_RS11925 WP_000842216.1 2354977..2355255(+) (abrB) [Bacillus cereus strain HN001]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment