Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VT48_RS18940 Genome accession   NZ_CP011150
Coordinates   3727821..3728363 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus altitudinis strain W3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3722821..3733363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS18915 (VT48_18915) - 3723094..3723705 (-) 612 WP_024718443.1 alpha/beta hydrolase -
  VT48_RS18920 (VT48_18920) - 3723702..3724673 (-) 972 WP_007497450.1 ring-cleaving dioxygenase -
  VT48_RS18925 (VT48_18925) - 3724864..3726381 (-) 1518 WP_046344916.1 ABC transporter permease/substrate-binding protein -
  VT48_RS18930 (VT48_18930) - 3726374..3727339 (-) 966 WP_046344918.1 ABC transporter ATP-binding protein -
  VT48_RS18935 (VT48_18935) rpsR 3727540..3727779 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  VT48_RS18940 (VT48_18940) ssbA 3727821..3728363 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  VT48_RS18945 (VT48_18945) rpsF 3728400..3728687 (-) 288 WP_008347557.1 30S ribosomal protein S6 -
  VT48_RS18950 (VT48_18950) ychF 3728796..3729896 (-) 1101 WP_007497458.1 redox-regulated ATPase YchF -
  VT48_RS18955 (VT48_18955) - 3730112..3730318 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  VT48_RS18960 (VT48_18960) - 3730613..3731932 (+) 1320 WP_046344920.1 phage hydrolase -
  VT48_RS18965 (VT48_18965) - 3731948..3732358 (+) 411 WP_007497462.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=142864 VT48_RS18940 WP_007497456.1 3727821..3728363(-) (ssbA) [Bacillus altitudinis strain W3]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=142864 VT48_RS18940 WP_007497456.1 3727821..3728363(-) (ssbA) [Bacillus altitudinis strain W3]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361

Multiple sequence alignment