Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LG3211_RS18355 Genome accession   NZ_CP011131
Coordinates   4534277..4535686 (+) Length   469 a.a.
NCBI ID   WP_057944088.1    Uniprot ID   -
Organism   Lysobacter gummosus strain 3.2.11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4529277..4540686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG3211_RS18330 (LG3211_4039) - 4529360..4529656 (-) 297 WP_057944084.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LG3211_RS18335 (LG3211_4040) - 4529658..4529942 (-) 285 WP_057944085.1 CopG family transcriptional regulator -
  LG3211_RS18340 (LG3211_4041) sucD 4530097..4530972 (-) 876 WP_057944086.1 succinate--CoA ligase subunit alpha -
  LG3211_RS18345 (LG3211_4042) sucC 4530985..4532151 (-) 1167 WP_057944087.1 ADP-forming succinate--CoA ligase subunit beta -
  LG3211_RS18350 (LG3211_4044) - 4532554..4534179 (+) 1626 WP_235113844.1 ATP-binding protein -
  LG3211_RS18355 (LG3211_4045) pilR 4534277..4535686 (+) 1410 WP_057944088.1 sigma-54 dependent transcriptional regulator Regulator
  LG3211_RS18360 (LG3211_4046) pilA2 4536395..4536826 (+) 432 WP_057944089.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LG3211_RS18365 (LG3211_4047) - 4537193..4537606 (+) 414 WP_057944090.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LG3211_RS18370 (LG3211_4048) - 4537731..4539626 (+) 1896 WP_148649004.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 50781.19 Da        Isoelectric Point: 6.7656

>NTDB_id=142636 LG3211_RS18355 WP_057944088.1 4534277..4535686(+) (pilR) [Lysobacter gummosus strain 3.2.11]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLGEARSQLLRNSYDLCLTDMRLPDGSGMDLVAEISQKYPNTPVA
MITAFGNVEAAVDALKAGAFDFVAKPVDLAVLRDLVRHALELNDTRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAELVVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERLDDLPGLAG
KILHRLAGNQGRPVPRLGDDALDALRAYGFPGNVRELENILERALALAEGEVLSATDLRLPRLSTQPPPLPANVAQNGNP
PQQAGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=142636 LG3211_RS18355 WP_057944088.1 4534277..4535686(+) (pilR) [Lysobacter gummosus strain 3.2.11]
ATGGCTGAAACCCGTAGTGCATTGGTAGTCGATGACGAGCGCGATATTCGCGAGCTGCTGGTCATGACCTTGGGCCGGAT
GGGCCTGCGTTGCGACACCGCGTCGGGCCTCGGCGAGGCTCGCAGCCAGCTGCTGCGCAACAGTTACGACTTGTGCCTGA
CCGACATGCGCCTGCCGGACGGCTCGGGCATGGATCTGGTCGCCGAGATCAGCCAGAAGTACCCGAACACCCCGGTGGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGATGCGCTCAAGGCCGGCGCCTTCGATTTCGTCGCCAAGCCGGT
CGATCTGGCGGTGCTGCGCGATCTGGTGCGGCACGCGCTGGAACTCAACGACACCCGCCGCAGCGCCAGCGAGGCCGTGG
GCTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAACTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCG
GTGTACATCGCCGGCGAGTCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACTCCGAAGGCGGCCGCGCCGACGG
CCCGTTCGTGCCGGTCAACTGCGGCGCGATTCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCATAAGAAAGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTCGACGAAGTCGCCGAG
CTGCCGTTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCCGGTCGGCGCGCAAGCCGAACT
GGTGGTCGACGTGCGCATTCTGTCGGCGACCCACAAGGACCTCGCCGCGCTGGTGGCCGACGGCCGCTTCCGCCAAGACC
TTTATTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCTCGACGACCTGCCCGGCCTGGCCGGC
AAGATCCTGCACCGCCTCGCCGGCAACCAGGGCCGTCCGGTCCCGCGCCTGGGCGACGACGCCCTCGACGCGCTGCGTGC
GTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGGCGAAGTGCTCA
GCGCCACCGACCTGCGCCTGCCGCGCCTGTCCACGCAGCCGCCGCCGCTGCCGGCCAACGTCGCCCAGAACGGCAACCCG
CCACAGCAAGCCGGCGCCGTCGACCCGCGCACGCTCAACCCGCGCGACACCGCGACCAGCGCCCTGCCCTCGTACATCGA
GGAAATAGAACGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCGGCGGCGCTGGGGA
TTACCTTTCGTGCGCTGCGGTATAAGCTCAAGAAGCTTGGGATTGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.446

99.36

0.62
  pilR Acinetobacter baumannii strain A118

48.428

100

0.493

Multiple sequence alignment