Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LG3211_RS04395 Genome accession   NZ_CP011131
Coordinates   1080133..1081191 (+) Length   352 a.a.
NCBI ID   WP_057941762.1    Uniprot ID   -
Organism   Lysobacter gummosus strain 3.2.11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1075133..1086191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG3211_RS04385 (LG3211_0971) - 1076106..1076759 (-) 654 WP_057941760.1 hypothetical protein -
  LG3211_RS04390 (LG3211_0972) - 1076983..1079556 (-) 2574 WP_057941761.1 penicillin-binding protein 1A -
  LG3211_RS04395 (LG3211_0974) pilM 1080133..1081191 (+) 1059 WP_057941762.1 pilus assembly protein PilM Machinery gene
  LG3211_RS04400 (LG3211_0975) - 1081191..1082030 (+) 840 WP_057941763.1 PilN domain-containing protein -
  LG3211_RS04405 (LG3211_0976) pilO 1082027..1082728 (+) 702 WP_057941764.1 type 4a pilus biogenesis protein PilO -
  LG3211_RS04410 (LG3211_0977) - 1082730..1083281 (+) 552 WP_057941765.1 pilus assembly protein PilP -
  LG3211_RS04415 (LG3211_0978) pilQ 1083294..1085414 (+) 2121 WP_237049830.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37801.19 Da        Isoelectric Point: 4.6415

>NTDB_id=142625 LG3211_RS04395 WP_057941762.1 1080133..1081191(+) (pilM) [Lysobacter gummosus strain 3.2.11]
MGLITKSQPALVGVDISSTAVKLLQLSRVGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIKRAVARSGTRVKHAAAA
VAGSSVITRVIGMPSDLDEDELESQIELEAANYVPYPIDEVNHDFEILGPMPGSPDMVQVLLAASRSENVEVRASALELG
GLTPKVMDVEAFAIENAFALLADTLSSPRDGLVALVDSGATMTTLNVLRNGRSLYHREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYQAEVLEPFKEAMVQQVSRLLQFFYAGSEFNRVDQIVLAGGGASIPRIAEMVEEQLGVPTTVANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=142625 LG3211_RS04395 WP_057941762.1 1080133..1081191(+) (pilM) [Lysobacter gummosus strain 3.2.11]
GTGGGACTCATCACAAAAAGCCAGCCGGCCTTGGTCGGTGTGGATATCAGCTCGACCGCGGTAAAGTTGCTGCAACTCTC
ACGAGTGGGCAATCGCTACCGCGTTGAGCATTATGCGGTCGAACCGCTGCCGCCCAATGCGGTGGTGGAAAAGAACATTG
TCGAGGTCGAAGCGGTGGGCGAGGCGATCAAACGCGCTGTCGCTCGATCGGGGACCCGCGTGAAGCACGCCGCCGCCGCG
GTCGCCGGTTCTTCGGTGATCACCCGCGTCATCGGCATGCCGAGCGATCTCGACGAAGACGAGCTGGAATCGCAGATCGA
GCTGGAGGCGGCCAATTACGTGCCGTATCCGATCGACGAGGTGAACCACGACTTCGAAATCCTCGGCCCGATGCCGGGCA
GCCCGGACATGGTCCAGGTGCTGCTCGCGGCCTCGCGTTCGGAGAACGTCGAAGTCCGTGCTTCGGCGCTGGAGCTCGGC
GGCCTGACCCCCAAGGTCATGGACGTGGAAGCTTTCGCGATCGAGAACGCCTTCGCCCTGCTCGCCGACACGCTCAGCAG
TCCGCGCGACGGACTGGTGGCGCTGGTGGACTCCGGCGCGACCATGACCACGCTCAATGTCTTGCGCAACGGCCGCAGCC
TGTATCACCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGGTCATGCGCCGGTACGGGCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGTTGCCGGAGAGCTATCAGGCCGAGGTGCTCGAGCCGTTCAAGGAAGCGATGGT
TCAGCAGGTCAGCCGTCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAACCGCGTCGATCAGATCGTCCTGGCCGGCG
GCGGCGCTTCGATTCCGCGCATCGCCGAGATGGTCGAAGAACAGCTCGGCGTACCGACCACCGTGGCCAATCCGCTCGCG
CACATGACTCTGGGCCCGCGCGTCCAGGCCCATGCGCTGGCGCAGGACGCACCCGCACTGATGATTGCCTGCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.286

99.432

0.5
  pilM Legionella pneumophila strain ERS1305867

44.571

99.432

0.443

Multiple sequence alignment