Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SR35_RS22260 Genome accession   NZ_CP011113
Coordinates   4232188..4232724 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain RR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4227188..4237724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR35_RS22240 (SR35_20815) aphA 4227477..4228190 (+) 714 WP_001226928.1 acid phosphatase AphA -
  SR35_RS22245 (SR35_20820) yjbQ 4228301..4228717 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SR35_RS22250 (SR35_20825) yjbR 4228721..4229077 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  SR35_RS22255 (SR35_20830) uvrA 4229112..4231934 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  SR35_RS22260 (SR35_20835) ssb 4232188..4232724 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SR35_RS22265 (SR35_20840) yjcB 4232823..4233104 (-) 282 WP_001295689.1 YjcB family protein -
  SR35_RS22275 (SR35_20845) pdeC 4233534..4235120 (+) 1587 WP_001698761.1 c-di-GMP phosphodiesterase PdeC -
  SR35_RS22280 (SR35_20850) soxS 4235123..4235446 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  SR35_RS22285 (SR35_20855) soxR 4235532..4235996 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=142370 SR35_RS22260 WP_000168305.1 4232188..4232724(+) (ssb) [Escherichia coli strain RR1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=142370 SR35_RS22260 WP_000168305.1 4232188..4232724(+) (ssb) [Escherichia coli strain RR1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment