Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PCL1606_RS03530 | Genome accession | NZ_CP011110 |
| Coordinates | 743813..744316 (+) | Length | 167 a.a. |
| NCBI ID | WP_044465320.1 | Uniprot ID | - |
| Organism | Pseudomonas chlororaphis strain PCL1606 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 738813..749316
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCL1606_RS03515 (PCL1606_07140) | bfr | 738867..739331 (+) | 465 | WP_044465323.1 | bacterioferritin | - |
| PCL1606_RS03520 (PCL1606_07150) | uvrA | 739394..742228 (-) | 2835 | WP_044465322.1 | excinuclease ABC subunit UvrA | - |
| PCL1606_RS03525 (PCL1606_07160) | - | 742409..743803 (+) | 1395 | WP_044465321.1 | MFS transporter | - |
| PCL1606_RS03530 (PCL1606_07170) | ssb | 743813..744316 (+) | 504 | WP_044465320.1 | single-stranded DNA-binding protein | Machinery gene |
| PCL1606_RS03535 (PCL1606_07180) | - | 744405..744956 (-) | 552 | WP_045881075.1 | cysteine hydrolase family protein | - |
| PCL1606_RS03540 (PCL1606_07190) | - | 745060..746067 (+) | 1008 | WP_045881076.1 | GlxA family transcriptional regulator | - |
| PCL1606_RS03545 (PCL1606_07200) | - | 746247..747356 (+) | 1110 | WP_045881077.1 | DUF3182 family protein | - |
| PCL1606_RS03550 (PCL1606_07210) | - | 747346..748101 (+) | 756 | WP_044465316.1 | alpha/beta hydrolase family protein | - |
| PCL1606_RS03555 (PCL1606_07220) | - | 748166..749161 (-) | 996 | WP_045881078.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18573.70 Da Isoelectric Point: 5.9314
>NTDB_id=142324 PCL1606_RS03530 WP_044465320.1 743813..744316(+) (ssb) [Pseudomonas chlororaphis strain PCL1606]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNAAPRPQQSRPQPSQAPQRPAPQQSSPQPAQNFDDS
FDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNAAPRPQQSRPQPSQAPQRPAPQQSSPQPAQNFDDS
FDDDIPF
Nucleotide
Download Length: 504 bp
>NTDB_id=142324 PCL1606_RS03530 WP_044465320.1 743813..744316(+) (ssb) [Pseudomonas chlororaphis strain PCL1606]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACGCCGCGCCACGTCCTCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTCGACGACAGC
TTCGATGACGATATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACGCCGCGCCACGTCCTCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTCGACGACAGC
TTCGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.25 |
100 |
0.593 |
| ssb | Glaesserella parasuis strain SC1401 |
47.12 |
100 |
0.539 |
| ssb | Neisseria meningitidis MC58 |
49.432 |
100 |
0.521 |
| ssb | Neisseria gonorrhoeae MS11 |
48.864 |
100 |
0.515 |