Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ATE51_RS02075 Genome accession   NZ_CP013733
Coordinates   420414..421424 (-) Length   336 a.a.
NCBI ID   WP_058914581.1    Uniprot ID   -
Organism   Campylobacter coli strain OR12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 415414..426424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE51_RS02060 (ATE51_00830) glmS 415992..417788 (+) 1797 WP_002777801.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  ATE51_RS02065 (ATE51_00832) fumC 417923..419314 (+) 1392 WP_002777799.1 class II fumarate hydratase -
  ATE51_RS02070 (ATE51_00834) - 419361..420404 (-) 1044 WP_002789620.1 AI-2E family transporter -
  ATE51_RS02075 (ATE51_00836) ruvB 420414..421424 (-) 1011 WP_058914581.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ATE51_RS02080 (ATE51_00838) - 421516..421926 (+) 411 WP_002783915.1 hypothetical protein -
  ATE51_RS02085 (ATE51_00842) - 422492..424765 (+) 2274 WP_052779875.1 autotransporter outer membrane beta-barrel domain-containing protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37588.03 Da        Isoelectric Point: 4.8432

>NTDB_id=142265 ATE51_RS02075 WP_058914581.1 420414..421424(-) (ruvB) [Campylobacter coli strain OR12]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQENIKKNLNVFISAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKNEELAIILQKAALKLNKSCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETIT
KERAKEALNSLGVNELGFDAMDLRYLELLTEAKRKPMGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
FSVLKLNYEQTLFDEN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=142265 ATE51_RS02075 WP_058914581.1 420414..421424(-) (ruvB) [Campylobacter coli strain OR12]
ATGGACAGAATAGTAGAAATAGAAAAATATTCTTTTGACGAAACTTATGAAACTTCTCTGCGTCCTTCAAATTTCGATGG
CTACATAGGACAAGAAAACATTAAAAAAAATTTAAATGTTTTTATTAGCGCTGCAAAAAAAAGAAATGAATGCTTAGACC
ATATACTTTTTAGTGGGCCTGCAGGACTTGGCAAAACTACATTGGCTAATATTATTTCTTATGAGATGGGTGCAAATATC
AAAACAACTGCGGCTCCTATGATAGAAAAAAGCGGGGATTTGGCTGCAATTTTAACCAATTTAAGCGAAGGAGATGTGCT
TTTTATCGATGAAATTCATCGCTTAAGCCCTGCTATTGAAGAAGTACTTTACCCTGCAATGGAAGATTATAGGCTAGATA
TCATCATCGGTAGTGGCCCTGCAGCACAAACTATAAAAATCGATTTGCCTAAATTTACACTTATTGGCGCTACAACCCGT
GCAGGAATGCTTAGCAATCCTTTAAGAGATCGTTTTGGAATGCAATTTAGACTTGAATTTTATAAAAATGAAGAGCTTGC
TATCATACTTCAAAAAGCTGCACTAAAGCTCAATAAAAGCTGTGAAAATGAAGCTGCACTTGAGATTGCCAAAAGAAGTC
GCTCTACCCCTAGAATCGCACTTAGACTTTTAAAAAGAGTGAGAGATTTTGCAGATGTAAATGACGAAGAAACGATCACC
AAAGAAAGGGCTAAAGAAGCATTAAATTCTTTAGGTGTCAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTAGA
GCTTTTAACAGAGGCTAAAAGAAAGCCTATGGGACTTTCTAGTATAGCGGCAGCTTTGAGTGAAGATGAAAATACTATTG
AAGATGTAATCGAACCTTATTTGCTTGCAAATGGCTACATAGAACGCACTGCCAAAGGTCGTATAGCAAGTACAAAAAGT
TTTAGTGTACTTAAGCTTAATTACGAACAAACTTTATTTGATGAAAATTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

68.862

99.405

0.685
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.374

97.024

0.518
  ruvB Streptococcus pneumoniae TIGR4

48.338

98.512

0.476
  ruvB Streptococcus pneumoniae R6

48.338

98.512

0.476
  ruvB Streptococcus pneumoniae D39

48.338

98.512

0.476
  ruvB Synechocystis sp. PCC 6803

49.841

93.75

0.467