Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AzCIB_RS20015 Genome accession   NZ_CP011072
Coordinates   4470421..4470915 (-) Length   164 a.a.
NCBI ID   WP_050417509.1    Uniprot ID   -
Organism   Azoarcus sp. CIB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4465421..4475915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AzCIB_RS20010 (AzCIB_4006) - 4467823..4469976 (-) 2154 WP_050417508.1 hydantoinase/oxoprolinase family protein -
  AzCIB_RS20015 (AzCIB_4007) ssb 4470421..4470915 (-) 495 WP_050417509.1 single-stranded DNA-binding protein Machinery gene
  AzCIB_RS20020 (AzCIB_4008) - 4470940..4472124 (-) 1185 WP_050418482.1 MFS transporter -
  AzCIB_RS20025 (AzCIB_4009) uvrA 4472259..4475093 (+) 2835 WP_050417510.1 excinuclease ABC subunit UvrA -
  AzCIB_RS20030 (AzCIB_4010) - 4475206..4475505 (+) 300 WP_050417511.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17621.57 Da        Isoelectric Point: 5.9441

>NTDB_id=142038 AzCIB_RS20015 WP_050417509.1 4470421..4470915(-) (ssb) [Azoarcus sp. CIB]
MASLNKVILIGNLGRDPETRYAPSGDAICNITVATTETWKDKATGERKEATEWHRVVFFGRLAEIAAQYLRKGSQLYVEG
RLQTRKWQDKDGQDRYTTEIRGDEMKMLGSRQGGGGGDAPMGGGYDAPAAAPARQAPQQAPAQKAPGQSGGGGGFGDFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=142038 AzCIB_RS20015 WP_050417509.1 4470421..4470915(-) (ssb) [Azoarcus sp. CIB]
ATGGCTTCGTTGAACAAAGTCATCCTGATCGGCAATCTGGGCCGCGATCCGGAAACCCGCTATGCGCCGAGCGGCGACGC
GATCTGCAACATCACCGTGGCGACCACCGAGACGTGGAAGGACAAGGCGACCGGCGAGCGCAAGGAAGCGACCGAGTGGC
ACCGCGTGGTGTTCTTCGGCCGTCTGGCCGAGATCGCGGCGCAGTACCTGCGCAAGGGCAGCCAGCTCTACGTCGAAGGG
CGCCTGCAGACGCGCAAGTGGCAGGACAAGGACGGCCAGGACCGCTACACGACCGAGATCCGCGGCGACGAGATGAAGAT
GCTGGGTTCGCGCCAGGGCGGCGGCGGTGGAGATGCGCCGATGGGCGGTGGCTACGATGCCCCGGCCGCGGCGCCTGCGC
GCCAGGCTCCGCAGCAGGCGCCGGCGCAGAAGGCGCCGGGCCAGTCGGGCGGTGGCGGCGGGTTCGGGGACTTCGACGAC
GACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.866

100

0.61
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.579
  ssb Neisseria meningitidis MC58

50.286

100

0.537
  ssb Neisseria gonorrhoeae MS11

50.286

100

0.537

Multiple sequence alignment