Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VT08_RS07400 | Genome accession | NZ_CP011069 |
| Coordinates | 1507504..1507995 (-) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain STAB09014 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1502504..1512995
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VT08_RS07385 (VT08_07405) | - | 1505234..1506178 (+) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
| VT08_RS07390 (VT08_07410) | - | 1506311..1506967 (+) | 657 | WP_011285125.1 | DUF1129 domain-containing protein | - |
| VT08_RS07395 (VT08_07415) | rpsR | 1507100..1507339 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| VT08_RS07400 (VT08_07420) | ssb | 1507504..1507995 (-) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| VT08_RS07405 (VT08_07425) | rpsF | 1508017..1508307 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| VT08_RS07410 (VT08_07430) | - | 1508480..1508773 (-) | 294 | WP_002983113.1 | hypothetical protein | - |
| VT08_RS07415 (VT08_07435) | mutY | 1508941..1510095 (+) | 1155 | WP_011285126.1 | A/G-specific adenine glycosylase | - |
| VT08_RS07420 (VT08_07440) | - | 1510171..1510759 (+) | 589 | Protein_1434 | helix-turn-helix domain-containing protein | - |
| VT08_RS07425 (VT08_07445) | trxA | 1510811..1511143 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| VT08_RS07430 (VT08_07450) | - | 1511206..1511706 (-) | 501 | WP_021340895.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=142000 VT08_RS07400 WP_002983122.1 1507504..1507995(-) (ssb) [Streptococcus pyogenes strain STAB09014]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=142000 VT08_RS07400 WP_002983122.1 1507504..1507995(-) (ssb) [Streptococcus pyogenes strain STAB09014]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |