Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VU19_RS07910 | Genome accession | NZ_CP011068 |
| Coordinates | 1596141..1596632 (-) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain STAB10015 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1591141..1601632
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VU19_RS07895 (VU19_07890) | - | 1593871..1594815 (+) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
| VU19_RS07900 (VU19_07895) | - | 1594948..1595604 (+) | 657 | WP_011285125.1 | DUF1129 domain-containing protein | - |
| VU19_RS07905 (VU19_07900) | rpsR | 1595737..1595976 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| VU19_RS07910 (VU19_07905) | ssb | 1596141..1596632 (-) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| VU19_RS07915 (VU19_07910) | rpsF | 1596654..1596944 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| VU19_RS07920 (VU19_07915) | - | 1597117..1597410 (-) | 294 | WP_002983113.1 | hypothetical protein | - |
| VU19_RS07925 (VU19_07920) | mutY | 1597578..1598732 (+) | 1155 | WP_011285126.1 | A/G-specific adenine glycosylase | - |
| VU19_RS07930 (VU19_07925) | - | 1598808..1599396 (+) | 589 | Protein_1533 | helix-turn-helix domain-containing protein | - |
| VU19_RS07935 (VU19_07930) | trxA | 1599448..1599780 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| VU19_RS07940 (VU19_07935) | - | 1599843..1600343 (-) | 501 | WP_021340895.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=141947 VU19_RS07910 WP_002983122.1 1596141..1596632(-) (ssb) [Streptococcus pyogenes strain STAB10015]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=141947 VU19_RS07910 WP_002983122.1 1596141..1596632(-) (ssb) [Streptococcus pyogenes strain STAB10015]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |