Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Y979_RS21940 | Genome accession | NZ_CP011061 |
| Coordinates | 4461814..4462350 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli str. Sanji | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4438138..4482664 | 4461814..4462350 | within | 0 |
Gene organization within MGE regions
Location: 4438138..4482664
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y979_RS21830 (Y979_21855) | - | 4438392..4439972 (+) | 1581 | Protein_4188 | SopA family protein | - |
| Y979_RS21835 (Y979_21860) | ubiC | 4440195..4440692 (+) | 498 | WP_001326644.1 | chorismate lyase | - |
| Y979_RS21840 (Y979_21865) | ubiA | 4440705..4441577 (+) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| Y979_RS21845 (Y979_21870) | plsB | 4441732..4444155 (-) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| Y979_RS21850 (Y979_21875) | dgkA | 4444326..4444694 (+) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| Y979_RS21855 (Y979_21880) | lexA | 4444804..4445412 (+) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| Y979_RS21860 (Y979_21885) | dinF | 4445485..4446810 (+) | 1326 | WP_001326646.1 | MATE family efflux transporter DinF | - |
| Y979_RS21865 (Y979_21890) | yjbJ | 4446926..4447135 (+) | 210 | WP_001030593.1 | CsbD family protein | - |
| Y979_RS21870 (Y979_21895) | zur | 4447177..4447692 (-) | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| Y979_RS32190 (Y979_21900) | yjbL | 4448010..4448264 (+) | 255 | WP_000912571.1 | protein YjbL | - |
| Y979_RS21880 (Y979_21905) | yjbM | 4448288..4448995 (+) | 708 | WP_001311303.1 | DUF2713 domain-containing protein | - |
| Y979_RS21885 (Y979_21910) | dusA | 4449358..4450395 (+) | 1038 | WP_001298868.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| Y979_RS21890 (Y979_21915) | pspG | 4450529..4450771 (+) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| Y979_RS21895 (Y979_21920) | qorA | 4450937..4451920 (-) | 984 | WP_062914737.1 | quinone oxidoreductase | - |
| Y979_RS21900 (Y979_21925) | dnaB | 4452003..4453418 (+) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| Y979_RS21905 (Y979_21930) | alr | 4453471..4454550 (+) | 1080 | WP_001147328.1 | alanine racemase | - |
| Y979_RS21910 (Y979_21935) | tyrB | 4454803..4455996 (+) | 1194 | WP_000486985.1 | aromatic amino acid transaminase | - |
| Y979_RS31470 | yjbS | 4456498..4456701 (-) | 204 | WP_001321562.1 | protein YjbS | - |
| Y979_RS21920 (Y979_21945) | aphA | 4457103..4457816 (+) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| Y979_RS21925 (Y979_21950) | yjbQ | 4457927..4458343 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| Y979_RS21930 (Y979_21955) | yjbR | 4458347..4458703 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| Y979_RS21935 (Y979_21960) | uvrA | 4458738..4461560 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| Y979_RS21940 (Y979_21965) | ssb | 4461814..4462350 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| Y979_RS21945 (Y979_21970) | - | 4462509..4463756 (+) | 1248 | WP_000414651.1 | site-specific integrase | - |
| Y979_RS21950 (Y979_21975) | - | 4463743..4465281 (+) | 1539 | WP_001333349.1 | site-specific integrase | - |
| Y979_RS21955 (Y979_21980) | - | 4465298..4467331 (+) | 2034 | WP_000807722.1 | hypothetical protein | - |
| Y979_RS31475 (Y979_21985) | - | 4467324..4467743 (+) | 420 | WP_001062122.1 | hypothetical protein | - |
| Y979_RS21965 (Y979_21990) | avs4 | 4467819..4472582 (+) | 4764 | WP_062914738.1 | AVAST type 4 anti-phage nuclease Avs4 | - |
| Y979_RS21975 (Y979_22000) | - | 4473121..4473942 (-) | 822 | WP_001272932.1 | abortive infection system antitoxin AbiGi family protein | - |
| Y979_RS21980 (Y979_22005) | yjcB | 4474350..4474631 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
| Y979_RS21985 (Y979_22010) | pdeC | 4475061..4476647 (+) | 1587 | WP_000019548.1 | c-di-GMP phosphodiesterase PdeC | - |
| Y979_RS21990 (Y979_22015) | soxS | 4476650..4476973 (-) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| Y979_RS21995 (Y979_22020) | soxR | 4477059..4477523 (+) | 465 | WP_000412430.1 | redox-sensitive transcriptional activator SoxR | - |
| Y979_RS22000 (Y979_22025) | ghxP | 4478069..4479418 (+) | 1350 | WP_000106882.1 | guanine/hypoxanthine transporter GhxP | - |
| Y979_RS22005 (Y979_22030) | yjcE | 4479569..4481218 (+) | 1650 | WP_000402207.1 | Na+/H+ antiporter | - |
| Y979_RS22010 (Y979_22035) | espX5 | 4481372..4482664 (-) | 1293 | WP_001270095.1 | T3SS effector pentapeptide repeat protein EspX5 | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=141901 Y979_RS21940 WP_000168305.1 4461814..4462350(+) (ssb) [Escherichia coli str. Sanji]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=141901 Y979_RS21940 WP_000168305.1 4461814..4462350(+) (ssb) [Escherichia coli str. Sanji]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |