Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KO116_RS20905 Genome accession   NZ_CP011052
Coordinates   4551010..4551639 (-) Length   209 a.a.
NCBI ID   WP_035563958.1    Uniprot ID   A0A0D5MA21
Organism   Halomonas sp. KO116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4546010..4556639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO116_RS20875 (KO116_04216) - 4546066..4546560 (+) 495 WP_035563970.1 DUF2878 domain-containing protein -
  KO116_RS20880 - 4546557..4547290 (-) 734 Protein_4165 EAL domain-containing protein -
  KO116_RS20885 (KO116_04218) fabA 4547491..4548006 (+) 516 WP_008959204.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  KO116_RS20890 (KO116_04219) fabB 4548020..4549237 (+) 1218 WP_035563967.1 beta-ketoacyl-ACP synthase I -
  KO116_RS20895 (KO116_04220) - 4549329..4550069 (-) 741 WP_035563964.1 lysophospholipid acyltransferase family protein -
  KO116_RS20900 (KO116_04221) - 4550066..4550956 (-) 891 WP_035563961.1 sugar nucleotide-binding protein -
  KO116_RS20905 (KO116_04222) ssb 4551010..4551639 (-) 630 WP_035563958.1 single-stranded DNA-binding protein Machinery gene
  KO116_RS20910 (KO116_04223) - 4551713..4553092 (-) 1380 WP_035563955.1 MFS transporter -
  KO116_RS20915 (KO116_04224) uvrA 4553297..4556143 (+) 2847 WP_035563953.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22799.81 Da        Isoelectric Point: 4.9557

>NTDB_id=141843 KO116_RS20905 WP_035563958.1 4551010..4551639(-) (ssb) [Halomonas sp. KO116]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRVVMFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRSGDFQGAGAGQNSYPQNAPQNAPQNAPAPNSQGGGYPQQGGAPQGGNY
PDGQSPQQPRPAKPAPQQGNQAPPPNQQNSSYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 630 bp        

>NTDB_id=141843 KO116_RS20905 WP_035563958.1 4551010..4551639(-) (ssb) [Halomonas sp. KO116]
ATGGCTCGCGGCATTAACAAGGTCATTTTGATTGGCAACCTCGGGCAGGATCCAGAGGTGCGTTTCACTCCCAGCGGTAC
CGCCGTGGCTAACTTGAACCTGGCGACCACCGATACCTGGATGGATCGCCAGAGCGGTCAGCGCCAGGAGCGTACCGAAT
GGCACCGCGTGGTGATGTTCAATAAAACCGCCGAAATTGCCCAGCAGTACCTGAAAAAAGGCTCCAAAGTCTATATTGAA
GGGCGTCTGCAAACCCGCAAATGGCAAGATCAGAACGGTCAGGATCGCTATTCGACAGAGATTGTCGCCAACGATATGCA
GATGCTTGATGGTCGCAGCGGTGATTTCCAAGGCGCTGGCGCTGGGCAAAACAGCTATCCCCAGAACGCTCCTCAGAATG
CGCCCCAAAACGCGCCGGCCCCCAATAGCCAAGGTGGCGGTTATCCACAGCAGGGTGGCGCACCTCAGGGCGGAAACTAC
CCAGACGGGCAGAGCCCGCAGCAGCCTCGCCCCGCAAAGCCAGCGCCCCAGCAGGGCAACCAAGCACCACCGCCCAACCA
GCAGAACAGCAGCTACGGTGCGCCTGACCCGGGTAATTTCGACGACTTTGACGATGAGATACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5MA21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.095

100

0.483
  ssb Vibrio cholerae strain A1552

47.196

100

0.483
  ssb Neisseria meningitidis MC58

43.204

98.565

0.426
  ssb Neisseria gonorrhoeae MS11

43.204

98.565

0.426

Multiple sequence alignment