Detailed information NTG0141835

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KO116_RS11785
• Genome accession: NZ_CP011052
• Coordinates: 2537564..2538409 (+)
• Length: 281 a.a.
• NCBI ID: WP_035558537.1
• Uniprot ID: -
• Organism: Halomonas sp. KO116
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2532564..2543409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KO116_RS11765 (KO116_02369)	-	2533092..2533541 (-)	450	WP_035558525.1	anti-virulence regulator CigR family protein	-
KO116_RS26195 (KO116_02370)	-	2533786..2534193 (-)	408	WP_035558528.1	pilin	-
KO116_RS11775 (KO116_02371)	pilB	2534496..2536268 (+)	1773	WP_035558531.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KO116_RS11780 (KO116_02372)	pilC	2536272..2537501 (+)	1230	WP_035558534.1	type II secretion system F family protein	Machinery gene
KO116_RS11785 (KO116_02373)	pilD	2537564..2538409 (+)	846	WP_035558537.1	A24 family peptidase	Machinery gene
KO116_RS11790 (KO116_02374)	coaE	2538519..2539121 (+)	603	WP_035558541.1	dephospho-CoA kinase	-
KO116_RS11795 (KO116_02375)	yacG	2539155..2539388 (+)	234	WP_035558545.1	DNA gyrase inhibitor YacG	-
KO116_RS11800 (KO116_02376)	-	2539440..2540315 (+)	876	WP_144408585.1	DNA replication terminus site-binding protein	-
KO116_RS11805 (KO116_02377)	-	2540346..2540687 (-)	342	WP_035558550.1	hypothetical protein	-
KO116_RS25800	-	2541131..2541373 (+)	243	WP_235272561.1	helix-turn-helix transcriptional regulator	-
KO116_RS25805 (KO116_02378)	-	2541445..2541744 (+)	300	WP_235272373.1	hypothetical protein	-
KO116_RS11815 (KO116_02379)	-	2541975..2542349 (-)	375	WP_008957328.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 30824.20 Da
• Isoelectric Point: 7.6262

>NTDB_id=141835 KO116_RS11785 WP_035558537.1 2537564..2538409(+) (pilD) [Halomonas sp. KO116]
MHYPPLIVWFMALLVGLCLGSFLNVVITRLPVMLMRHWRHEARAALELDEEHSPRFNLATPGSMCPRCETPIAWHDNLPL
IGWIKRRGRCAGCQTSISIQYPLVEMAGGLLALAVVALHGLTAESLFIYGACLMLLALAVIDLRTQLLPDIITLPLLWAG
LLFQLLFQPFMLSDAVIGVMVGYLSLWSFYWLFKLVTGKEGMGFGDFKLLAALGAWLGWSFLPLILILSAGLGAVVGLTA
QACAPRLRGKPLPFGPFLALAGWVALLVGDELMALYLSLLI

Nucleotide

• Length: 846 bp

>NTDB_id=141835 KO116_RS11785 WP_035558537.1 2537564..2538409(+) (pilD) [Halomonas sp. KO116]
ATGCATTACCCTCCACTGATTGTATGGTTCATGGCTTTATTGGTTGGGCTGTGCTTAGGCAGTTTTCTTAATGTGGTTAT
CACGCGCCTACCGGTCATGCTGATGCGCCATTGGCGGCATGAAGCACGTGCAGCGCTTGAGCTGGATGAGGAACACTCGC
CACGCTTCAATTTGGCCACACCAGGCTCAATGTGCCCCCGCTGTGAAACCCCGATTGCCTGGCACGATAACCTGCCGCTG
ATTGGCTGGATTAAACGCCGCGGGCGGTGTGCAGGGTGTCAAACGAGCATCAGCATACAATATCCGCTAGTGGAAATGGC
CGGTGGCCTACTGGCCTTGGCGGTAGTGGCACTCCATGGCCTCACTGCAGAGTCATTATTTATTTACGGCGCCTGCCTGA
TGCTGTTAGCACTCGCCGTGATTGATCTTCGCACCCAGTTATTGCCGGATATCATTACACTCCCGCTACTGTGGGCAGGC
TTACTTTTTCAGCTACTCTTCCAGCCGTTTATGCTCTCCGATGCCGTTATTGGCGTAATGGTGGGCTATCTTTCTCTATG
GAGTTTTTATTGGCTGTTCAAACTCGTCACCGGTAAAGAGGGCATGGGCTTTGGCGACTTTAAGCTGCTGGCCGCGCTGG
GTGCCTGGCTAGGCTGGAGCTTTTTACCACTTATCTTGATACTTTCCGCAGGGCTTGGCGCGGTGGTTGGTTTAACTGCG
CAGGCCTGCGCGCCTCGCTTACGTGGCAAACCATTACCCTTTGGGCCTTTTCTTGCCCTCGCTGGTTGGGTAGCGTTATT
AGTTGGCGATGAGCTAATGGCGCTGTATCTCAGCCTGCTTATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-116)

• Type IV leader peptidase family (Peptidase_A24) (132-238)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.296	100	0.498
pilD	Acinetobacter baumannii D1279779	47.407	96.085	0.456
pilD	Acinetobacter nosocomialis M2	47.407	96.085	0.456
pilD	Vibrio campbellii strain DS40M4	45.196	100	0.452
pilD	Neisseria gonorrhoeae MS11	43.561	93.95	0.409