Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BIS30_RS10270 Genome accession   NZ_CP011051
Coordinates   1956382..1956900 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus spizizenii strain T30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1951382..1961900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIS30_RS10240 (BIS30_10240) - 1951890..1953245 (+) 1356 WP_003219216.1 MFS transporter -
  BIS30_RS10245 (BIS30_10245) - 1953278..1953832 (-) 555 WP_003219218.1 sugar O-acetyltransferase -
  BIS30_RS10250 (BIS30_10250) - 1953850..1954230 (-) 381 WP_003219220.1 VOC family protein -
  BIS30_RS10255 (BIS30_10255) - 1954286..1955221 (-) 936 WP_003219221.1 LacI family DNA-binding transcriptional regulator -
  BIS30_RS10260 (BIS30_10260) xth 1955280..1956038 (-) 759 WP_003219223.1 exodeoxyribonuclease III -
  BIS30_RS10265 (BIS30_10265) rpsR 1956099..1956338 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BIS30_RS10270 (BIS30_10270) ssbA 1956382..1956900 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BIS30_RS10275 (BIS30_10275) rpsF 1956941..1957228 (-) 288 WP_003219230.1 30S ribosomal protein S6 -
  BIS30_RS10280 (BIS30_10280) ychF 1957339..1958439 (-) 1101 WP_003219232.1 redox-regulated ATPase YchF -
  BIS30_RS10285 (BIS30_10285) - 1958566..1960569 (-) 2004 WP_003219234.1 molybdopterin-dependent oxidoreductase -
  BIS30_RS10290 (BIS30_10290) - 1960620..1960826 (-) 207 WP_003219236.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=141786 BIS30_RS10270 WP_003219228.1 1956382..1956900(-) (ssbA) [Bacillus spizizenii strain T30]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=141786 BIS30_RS10270 WP_003219228.1 1956382..1956900(-) (ssbA) [Bacillus spizizenii strain T30]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACTGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGAGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment