Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | PTET_RS13255 | Genome accession | NZ_CP011041 |
| Coordinates | 2836024..2837160 (-) | Length | 378 a.a. |
| NCBI ID | WP_013465850.1 | Uniprot ID | A0AA37S1K5 |
| Organism | Pseudoalteromonas tetraodonis strain GFC | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2831024..2842160
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTET_RS13225 (PTET_a2941) | - | 2831541..2832434 (+) | 894 | WP_013465844.1 | hypothetical protein | - |
| PTET_RS13230 (PTET_a2942) | - | 2832512..2832985 (+) | 474 | WP_013465845.1 | hypothetical protein | - |
| PTET_RS13235 (PTET_a2943) | rsmE | 2833056..2833790 (+) | 735 | WP_013465846.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| PTET_RS13240 (PTET_a2944) | gshB | 2833857..2834807 (+) | 951 | WP_013465847.1 | glutathione synthase | - |
| PTET_RS13245 (PTET_a2945) | - | 2834943..2835500 (+) | 558 | WP_013465848.1 | YqgE/AlgH family protein | - |
| PTET_RS13250 (PTET_a2946) | ruvX | 2835518..2835967 (+) | 450 | WP_013465849.1 | Holliday junction resolvase RuvX | - |
| PTET_RS13255 (PTET_a2947) | pilU | 2836024..2837160 (-) | 1137 | WP_013465850.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| PTET_RS13260 (PTET_a2948) | pilT | 2837170..2838210 (-) | 1041 | WP_013465851.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PTET_RS13265 (PTET_a2949) | - | 2838213..2838926 (+) | 714 | WP_096038765.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PTET_RS13270 (PTET_a2950) | proC | 2838944..2839765 (+) | 822 | WP_024600822.1 | pyrroline-5-carboxylate reductase | - |
| PTET_RS13275 (PTET_a2951) | - | 2839792..2840325 (+) | 534 | WP_008113334.1 | YggT family protein | - |
| PTET_RS13280 (PTET_a2952) | - | 2840384..2840827 (+) | 444 | WP_096038766.1 | DUF4426 domain-containing protein | - |
| PTET_RS13285 (PTET_a2953) | - | 2840830..2841429 (+) | 600 | WP_069439858.1 | XTP/dITP diphosphatase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 41994.04 Da Isoelectric Point: 6.2895
>NTDB_id=141709 PTET_RS13255 WP_013465850.1 2836024..2837160(-) (pilU) [Pseudoalteromonas tetraodonis strain GFC]
MTLSLNHFLQIMIDKKGSDLFVSSQLPISAKINGELTPLNDDKLTDEQALELVESAMSEKQKAEFHNTKECNFAIATSEG
RFRISAFWQRDRAGMVIRRIVTKIPDVKELGLPSALTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRNQRGHILTIE
DPIEFVHEHQKSIITQREVGLDTESFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDR
IMHLVPKEKHDKLKYDLALNLRAIIAQQLIPTSDGEGRVAAIEVLLNTPMVSELIKNGNIGGIKETMAKSTEMGMQTFDQ
ALFELYRQQRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLDDKGNMT
MTLSLNHFLQIMIDKKGSDLFVSSQLPISAKINGELTPLNDDKLTDEQALELVESAMSEKQKAEFHNTKECNFAIATSEG
RFRISAFWQRDRAGMVIRRIVTKIPDVKELGLPSALTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRNQRGHILTIE
DPIEFVHEHQKSIITQREVGLDTESFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDR
IMHLVPKEKHDKLKYDLALNLRAIIAQQLIPTSDGEGRVAAIEVLLNTPMVSELIKNGNIGGIKETMAKSTEMGMQTFDQ
ALFELYRQQRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLDDKGNMT
Nucleotide
Download Length: 1137 bp
>NTDB_id=141709 PTET_RS13255 WP_013465850.1 2836024..2837160(-) (pilU) [Pseudoalteromonas tetraodonis strain GFC]
ATGACTTTATCTTTAAATCACTTTTTACAAATAATGATCGACAAAAAAGGCTCTGATTTATTTGTATCGAGCCAACTTCC
TATTAGCGCTAAAATTAACGGCGAGCTAACTCCTCTTAATGACGATAAATTAACAGATGAGCAAGCGCTAGAGTTAGTCG
AATCAGCGATGAGTGAAAAACAAAAAGCAGAGTTTCATAACACTAAAGAATGTAACTTTGCGATTGCAACTAGCGAAGGG
CGCTTTCGTATTTCGGCTTTTTGGCAACGCGACAGAGCGGGCATGGTTATTCGTCGAATTGTCACTAAAATACCCGATGT
TAAAGAGCTTGGATTACCCTCTGCATTGACCGATGTGATTATGTCAAAGCGCGGACTCGTGTTATTTGTAGGTGGTACGG
GAACCGGTAAATCAACGTCTTTGGCGGCACTTATTGGTTATAGAAATCGCAATCAACGTGGGCATATTTTAACCATAGAA
GATCCGATTGAATTTGTGCATGAACATCAAAAAAGTATTATTACCCAACGTGAAGTGGGTTTAGATACTGAAAGCTTTGA
ATCGGCACTTAAAAGCTCTTTGCGCCAAGCGCCTGATGTTATTTTAATTGGTGAAATTCGTTCGCAAGAAACCATGGAAT
ATGCGTTGAGCTTTGCAGAAACGGGTCATTTATGTGTTGCCACCTTGCATGCTAACAATGCTAATCAAGCTATTGACCGC
ATTATGCACTTAGTACCAAAAGAAAAGCACGATAAGCTTAAATATGACTTAGCATTAAATTTACGCGCTATCATTGCTCA
GCAACTTATTCCTACCTCTGATGGGGAAGGGCGTGTTGCTGCCATTGAGGTATTACTTAATACGCCAATGGTCAGTGAGC
TAATTAAAAACGGTAATATTGGTGGCATTAAAGAAACCATGGCTAAATCAACAGAGATGGGCATGCAAACCTTTGACCAA
GCGCTGTTTGAGCTTTACAGACAGCAACGTATTAATTATGCCGATGCGCTGCATCATGCGGATTCGCCAAATGACTTACG
CTTGATGATTAAACTACGTAATAACGAGCAACAAGGCGCAGGCTTCTTACAAGGTGTGACCATTGATGGCCTTGATGACA
AAGGCAATATGACTTAG
ATGACTTTATCTTTAAATCACTTTTTACAAATAATGATCGACAAAAAAGGCTCTGATTTATTTGTATCGAGCCAACTTCC
TATTAGCGCTAAAATTAACGGCGAGCTAACTCCTCTTAATGACGATAAATTAACAGATGAGCAAGCGCTAGAGTTAGTCG
AATCAGCGATGAGTGAAAAACAAAAAGCAGAGTTTCATAACACTAAAGAATGTAACTTTGCGATTGCAACTAGCGAAGGG
CGCTTTCGTATTTCGGCTTTTTGGCAACGCGACAGAGCGGGCATGGTTATTCGTCGAATTGTCACTAAAATACCCGATGT
TAAAGAGCTTGGATTACCCTCTGCATTGACCGATGTGATTATGTCAAAGCGCGGACTCGTGTTATTTGTAGGTGGTACGG
GAACCGGTAAATCAACGTCTTTGGCGGCACTTATTGGTTATAGAAATCGCAATCAACGTGGGCATATTTTAACCATAGAA
GATCCGATTGAATTTGTGCATGAACATCAAAAAAGTATTATTACCCAACGTGAAGTGGGTTTAGATACTGAAAGCTTTGA
ATCGGCACTTAAAAGCTCTTTGCGCCAAGCGCCTGATGTTATTTTAATTGGTGAAATTCGTTCGCAAGAAACCATGGAAT
ATGCGTTGAGCTTTGCAGAAACGGGTCATTTATGTGTTGCCACCTTGCATGCTAACAATGCTAATCAAGCTATTGACCGC
ATTATGCACTTAGTACCAAAAGAAAAGCACGATAAGCTTAAATATGACTTAGCATTAAATTTACGCGCTATCATTGCTCA
GCAACTTATTCCTACCTCTGATGGGGAAGGGCGTGTTGCTGCCATTGAGGTATTACTTAATACGCCAATGGTCAGTGAGC
TAATTAAAAACGGTAATATTGGTGGCATTAAAGAAACCATGGCTAAATCAACAGAGATGGGCATGCAAACCTTTGACCAA
GCGCTGTTTGAGCTTTACAGACAGCAACGTATTAATTATGCCGATGCGCTGCATCATGCGGATTCGCCAAATGACTTACG
CTTGATGATTAAACTACGTAATAACGAGCAACAAGGCGCAGGCTTCTTACAAGGTGTGACCATTGATGGCCTTGATGACA
AAGGCAATATGACTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
57.56 |
99.735 |
0.574 |
| pilU | Pseudomonas stutzeri DSM 10701 |
57.6 |
99.206 |
0.571 |
| pilU | Vibrio cholerae strain A1552 |
56.131 |
97.09 |
0.545 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.944 |
95.238 |
0.399 |