Detailed information NTG0141634

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PTRA_RS01865
• Genome accession: NZ_CP011034
• Coordinates: 400229..401125 (-)
• Length: 298 a.a.
• NCBI ID: WP_058372467.1
• Uniprot ID: A0A0U2WEY5
• Organism: Pseudoalteromonas translucida KMM 520
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 395229..406125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PTRA_RS01840 (PTRA_a0404)	-	395869..396558 (-)	690	WP_058374492.1	response regulator transcription factor	-
PTRA_RS01845 (PTRA_a0405)	-	396723..397208 (+)	486	WP_058372464.1	Spy/CpxP family protein refolding chaperone	-
PTRA_RS01850 (PTRA_a0407)	yacG	397445..397675 (-)	231	WP_011327088.1	DNA gyrase inhibitor YacG	-
PTRA_RS01855 (PTRA_a0408)	pilB	397801..399474 (-)	1674	WP_058372465.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PTRA_RS01860 (PTRA_a0409)	coaE	399595..400227 (-)	633	WP_058372466.1	dephospho-CoA kinase	-
PTRA_RS01865 (PTRA_a0410)	pilD	400229..401125 (-)	897	WP_058372467.1	prepilin peptidase	Machinery gene
PTRA_RS01870 (PTRA_a0411)	pilC	401161..402387 (-)	1227	WP_058372468.1	type II secretion system F family protein	Machinery gene
PTRA_RS01875 (PTRA_a0412)	-	402512..403123 (+)	612	WP_058374493.1	hypothetical protein	-
PTRA_RS01880 (PTRA_a0413)	-	403104..403535 (-)	432	WP_069188177.1	pilin	-
PTRA_RS01885 (PTRA_a0414)	-	403547..403990 (-)	444	WP_058372469.1	pilin	-
PTRA_RS01890 (PTRA_a0416)	nadC	404553..405398 (-)	846	WP_058372470.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 298 a.a.
• Molecular weight: 32778.95 Da
• Isoelectric Point: 6.8434

>NTDB_id=141634 PTRA_RS01865 WP_058372467.1 400229..401125(-) (pilD) [Pseudoalteromonas translucida KMM 520]
MQSIIEVMQSQLWFYLTTIGLVSLCVGSFLNVVIYRLPLMMQREWQGECRLLLESELKSNNTGENEPLNSTFNLIKPNST
CPKCKTAIKAWQNIPVISWLFLKGKCASCSNPISARYPIVEAITALLSLVVAYKLGATEQALLYIAVTWTLVALTFIDID
HMLLPDQITLPLVWLALIAAVLGYTVTPTDAIIGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSLLT
IILLSSVVGAIIGIALLTVQGKDKATPIPFGPYLAIAGWITMLWGEQLQASYFNVIGY

Nucleotide

• Length: 897 bp

>NTDB_id=141634 PTRA_RS01865 WP_058372467.1 400229..401125(-) (pilD) [Pseudoalteromonas translucida KMM 520]
ATGCAAAGTATTATAGAAGTAATGCAAAGCCAATTATGGTTTTATTTAACCACTATTGGCTTAGTGAGTTTATGTGTTGG
CAGTTTTTTAAACGTAGTTATTTACCGTTTGCCACTAATGATGCAACGCGAATGGCAAGGCGAATGCCGACTGCTTTTAG
AAAGCGAACTTAAAAGTAATAATACAGGCGAAAACGAGCCTTTAAACTCAACTTTTAATTTAATTAAGCCCAACTCTACC
TGCCCTAAATGTAAAACCGCAATTAAAGCGTGGCAAAACATTCCTGTTATTAGCTGGTTATTTTTAAAAGGTAAATGCGC
CAGTTGTAGTAACCCTATATCGGCTCGTTACCCTATTGTAGAGGCAATAACTGCACTATTAAGCTTAGTTGTTGCGTATA
AGCTGGGTGCTACTGAGCAGGCTTTACTTTATATAGCAGTTACTTGGACTTTAGTGGCACTTACCTTTATTGATATTGAC
CATATGCTCCTGCCCGACCAAATTACCCTACCGCTAGTGTGGCTGGCGCTTATAGCTGCAGTACTGGGCTATACCGTTAC
CCCAACTGATGCCATTATTGGTGCCGCTTGCGGCTATTTAAGTTTGTGGAGCGTATTTTGGTTATTTAAATTACTTACCG
GTAAAGAAGGCATGGGCTATGGCGATTTTAAATTACTTGCCGTGTTTGGTGCTTTGCTTGGCTGGCAATCATTATTAACT
ATTATTTTGCTCTCGAGCGTAGTGGGCGCCATTATTGGCATTGCGCTATTAACTGTTCAGGGTAAAGACAAAGCTACGCC
TATTCCGTTTGGCCCCTACCTTGCTATTGCAGGCTGGATCACCATGTTATGGGGCGAACAATTGCAAGCTAGTTACTTTA
ATGTAATTGGTTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-134)

• Type IV leader peptidase family (Peptidase_A24) (147-254)

3D structure

• AlphaFold DB: A0A0U2WEY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.218	98.322	0.513
pilD	Vibrio campbellii strain DS40M4	51.877	98.322	0.51
pilD	Acinetobacter baumannii D1279779	50.68	98.658	0.5
pilD	Acinetobacter nosocomialis M2	50.34	98.658	0.497
pilD	Neisseria gonorrhoeae MS11	45.693	89.597	0.409