Detailed information NTG0141577

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PESP_RS14850
• Genome accession: NZ_CP011028
• Coordinates: 3273803..3274693 (+)
• Length: 296 a.a.
• NCBI ID: WP_089348725.1
• Uniprot ID: -
• Organism: Pseudoalteromonas espejiana DSM 9414
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3268803..3279693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PESP_RS14825 (PESP_a3406)	ampE	3268892..3269743 (-)	852	WP_089348721.1	beta-lactamase regulator AmpE	-
PESP_RS14830 (PESP_a3407)	ampD	3269757..3270311 (-)	555	WP_089348722.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
PESP_RS14835 (PESP_a3408)	nadC	3270558..3271403 (+)	846	WP_089348723.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PESP_RS14840 (PESP_a3410)	-	3271879..3272346 (+)	468	WP_214631482.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PESP_RS14845 (PESP_a3412)	pilC	3272425..3273651 (+)	1227	WP_089348724.1	type II secretion system F family protein	Machinery gene
PESP_RS14850 (PESP_a3413)	pilD	3273803..3274693 (+)	891	WP_089348725.1	A24 family peptidase	Machinery gene
PESP_RS14855 (PESP_a3414)	coaE	3274695..3275336 (+)	642	WP_089348726.1	dephospho-CoA kinase	-
PESP_RS14860 (PESP_a3415)	pilB	3275462..3277138 (+)	1677	WP_089348727.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PESP_RS14865 (PESP_a3416)	yacG	3277191..3277421 (+)	231	WP_089348728.1	DNA gyrase inhibitor YacG	-
PESP_RS14870 (PESP_a3417)	-	3277510..3278001 (-)	492	WP_089348729.1	Spy/CpxP family protein refolding chaperone	-
PESP_RS14875 (PESP_a3419)	-	3278173..3278862 (+)	690	WP_089348730.1	response regulator transcription factor	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 32737.02 Da
• Isoelectric Point: 7.0183

>NTDB_id=141577 PESP_RS14850 WP_089348725.1 3273803..3274693(+) (pilD) [Pseudoalteromonas espejiana DSM 9414]
MQSIIEVMQSQMWFYLTTVGLVSLCVGSFLNVVIYRLPVMMQREWQSECRLLLEDELTAKPTQANTNEPFNLVKPNSTCP
KCKTAIKPWQNIPIISWLLLKGKCANCSNPISARYPIVEAITALLSLVIAYNFGATEHALLYIFVTWILVALTFIDIDHM
LLPDQLTLPLVWLALIVAVMGVTISPADAIVGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSLLTII
LLSSVVGAIIGIALLSIQGKDKTTPIPFGPYLAIAGWITLLWGTQIQNTYFNLIGY

Nucleotide

• Length: 891 bp

>NTDB_id=141577 PESP_RS14850 WP_089348725.1 3273803..3274693(+) (pilD) [Pseudoalteromonas espejiana DSM 9414]
ATGCAAAGTATTATAGAAGTAATGCAAAGCCAAATGTGGTTTTATCTAACAACGGTTGGCTTAGTTAGTTTATGTGTGGG
CAGTTTTTTAAATGTAGTAATTTACCGACTGCCAGTCATGATGCAGCGTGAGTGGCAAAGTGAATGTAGGTTATTATTAG
AAGATGAACTAACAGCTAAACCTACACAAGCCAACACCAATGAGCCTTTTAATTTAGTAAAGCCTAATTCTACCTGCCCC
AAATGCAAAACCGCCATTAAGCCTTGGCAAAATATTCCTATTATTAGCTGGCTTTTACTAAAAGGTAAATGCGCTAATTG
CAGCAACCCAATATCAGCGCGTTACCCAATAGTTGAAGCCATTACCGCACTATTAAGTTTAGTTATTGCCTATAACTTTG
GCGCTACAGAGCACGCCCTTTTATATATTTTTGTAACCTGGATTTTAGTGGCACTCACCTTTATAGATATTGACCACATG
CTACTGCCCGACCAGCTCACTCTGCCCTTAGTATGGCTTGCGCTTATTGTCGCTGTAATGGGAGTAACAATAAGCCCCGC
TGATGCAATTGTAGGCGCAGCATGTGGCTACTTAAGCCTCTGGAGTGTATTTTGGCTATTTAAGCTATTAACCGGTAAAG
AGGGCATGGGCTATGGCGATTTTAAATTACTCGCGGTATTTGGTGCTCTGCTTGGCTGGCAATCGCTACTAACCATTATT
TTGCTTTCAAGCGTAGTGGGCGCCATTATTGGTATTGCCCTTTTGAGTATTCAAGGTAAAGACAAAACAACCCCTATCCC
TTTTGGGCCTTACTTAGCCATAGCAGGTTGGATAACACTTTTGTGGGGCACTCAAATTCAAAATACTTACTTTAATTTAA
TTGGTTACTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (144-252)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.952	98.311	0.53
pilD	Vibrio cholerae strain A1552	52.941	97.635	0.517
pilD	Acinetobacter nosocomialis M2	51.37	98.649	0.507
pilD	Acinetobacter baumannii D1279779	51.37	98.649	0.507
pilD	Neisseria gonorrhoeae MS11	44.906	89.527	0.402