Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   UP17_RS24980 Genome accession   NZ_CP011008
Coordinates   5327562..5328092 (-) Length   176 a.a.
NCBI ID   WP_061465910.1    Uniprot ID   A0AAW7I9N5
Organism   Peribacillus simplex strain SH-B26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5322562..5333092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP17_RS24965 (UP17_24950) - 5324221..5325168 (-) 948 WP_061465909.1 YybS family protein -
  UP17_RS24970 (UP17_24955) ltrA 5325420..5326682 (-) 1263 WP_061461592.1 group II intron reverse transcriptase/maturase -
  UP17_RS24975 (UP17_24960) rpsR 5327275..5327514 (-) 240 WP_053348323.1 30S ribosomal protein S18 -
  UP17_RS24980 (UP17_24965) ssbA 5327562..5328092 (-) 531 WP_061465910.1 single-stranded DNA-binding protein Machinery gene
  UP17_RS24985 (UP17_24970) rpsF 5328163..5328447 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  UP17_RS24990 (UP17_24975) ychF 5328643..5329743 (-) 1101 WP_061465911.1 redox-regulated ATPase YchF -
  UP17_RS24995 (UP17_24980) - 5329910..5330107 (-) 198 WP_061465912.1 DUF951 domain-containing protein -
  UP17_RS25000 (UP17_24985) - 5330128..5330964 (-) 837 WP_061465913.1 mechanosensitive ion channel family protein -
  UP17_RS25005 (UP17_24990) yyaC 5331355..5331990 (+) 636 WP_061465914.1 spore protease YyaC -
  UP17_RS25010 (UP17_24995) - 5332273..5332974 (-) 702 WP_061465915.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19474.17 Da        Isoelectric Point: 4.8282

>NTDB_id=141411 UP17_RS24980 WP_061465910.1 5327562..5328092(-) (ssbA) [Peribacillus simplex strain SH-B26]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRGFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQKSYGNNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPF
ANDGKTIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=141411 UP17_RS24980 WP_061465910.1 5327562..5328092(-) (ssbA) [Peribacillus simplex strain SH-B26]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTGCGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAATCGTGGTTTTACGAATCAGCAAGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGAGGTCAAAAAAGTTATGGTAACAATAATAACGGAAATG
ACAACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTT
GCAAATGACGGTAAAACAATCGACATTTCAGATGACGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.715

100

0.699
  ssb Latilactobacillus sakei subsp. sakei 23K

56.18

100

0.568
  ssb Glaesserella parasuis strain SC1401

35.294

100

0.375
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

60.227

0.369

Multiple sequence alignment