Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   UP17_RS16415 Genome accession   NZ_CP011008
Coordinates   3526372..3526815 (-) Length   147 a.a.
NCBI ID   WP_208857025.1    Uniprot ID   -
Organism   Peribacillus simplex strain SH-B26     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3521372..3531815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP17_RS16390 (UP17_16375) - 3521942..3522628 (-) 687 WP_061464046.1 hypothetical protein -
  UP17_RS16395 (UP17_16380) - 3522625..3523347 (-) 723 WP_061464047.1 hypothetical protein -
  UP17_RS28925 - 3523376..3524254 (-) 879 WP_061464048.1 HNH endonuclease -
  UP17_RS28930 (UP17_16390) - 3524441..3524728 (+) 288 WP_250211686.1 hypothetical protein -
  UP17_RS16410 (UP17_16395) - 3524832..3526310 (-) 1479 WP_061464049.1 recombinase family protein -
  UP17_RS16415 (UP17_16400) comGA 3526372..3526815 (-) 444 WP_208857025.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  UP17_RS16420 (UP17_16405) - 3526918..3527298 (-) 381 WP_061464051.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  UP17_RS16425 (UP17_16410) - 3527513..3528214 (+) 702 WP_061464052.1 helix-turn-helix domain-containing protein -
  UP17_RS16430 (UP17_16415) - 3528300..3528542 (+) 243 WP_053346950.1 DUF2626 domain-containing protein -
  UP17_RS16435 (UP17_16420) - 3528599..3529699 (-) 1101 WP_061464053.1 SAM-dependent methyltransferase -
  UP17_RS16440 (UP17_16425) - 3530024..3530650 (-) 627 WP_061464054.1 MBL fold metallo-hydrolase -
  UP17_RS26775 (UP17_16430) - 3530882..3531055 (+) 174 WP_081108857.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16487.46 Da        Isoelectric Point: 10.2044

>NTDB_id=141383 UP17_RS16415 WP_208857025.1 3526372..3526815(-) (comGA) [Peribacillus simplex strain SH-B26]
MISIEKTAEKILTSAIRSSASDIHIFFRREGPLIQFRIDNKLVPQETISFFEAERLIAHLKFLAAMDIGEKRRPQSGAIT
INLANQVVGLRLSTLPTAYLESLVIRLIPQQNILPLEQLSLFPNTVQKLIALLKHSHGMLIFTGPTC

Nucleotide


Download         Length: 444 bp        

>NTDB_id=141383 UP17_RS16415 WP_208857025.1 3526372..3526815(-) (comGA) [Peribacillus simplex strain SH-B26]
TTGATATCAATTGAAAAGACCGCAGAAAAAATACTTACCAGTGCCATACGGTCATCGGCTTCGGATATCCACATTTTTTT
TCGCAGGGAGGGGCCCCTCATCCAATTCAGGATAGACAATAAGCTCGTTCCTCAGGAAACCATATCATTCTTTGAAGCTG
AAAGGCTGATAGCCCATTTGAAGTTCCTTGCCGCAATGGATATAGGCGAGAAAAGGAGGCCACAGAGTGGTGCTATCACC
ATCAATTTGGCTAACCAAGTGGTTGGACTCCGCCTTTCCACTTTACCCACTGCCTATCTTGAAAGCTTGGTCATCCGCTT
AATTCCCCAACAGAATATCCTTCCTCTAGAACAGTTATCCTTATTTCCAAACACCGTTCAAAAATTGATTGCACTTTTGA
AGCATTCCCATGGCATGCTCATATTTACCGGTCCAACGTGTTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

52.74

99.32

0.524
  pilB Haemophilus influenzae Rd KW20

38.298

95.918

0.367
  pilB Haemophilus influenzae 86-028NP

38.298

95.918

0.367
  pilB Glaesserella parasuis strain SC1401

39.416

93.197

0.367

Multiple sequence alignment