Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N805_RS19770 Genome accession   NZ_CP010979
Coordinates   4468508..4469056 (-) Length   182 a.a.
NCBI ID   WP_016484656.1    Uniprot ID   -
Organism   Pseudomonas putida S13.1.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4463508..4474056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N805_RS19750 (N805_19755) fdxH 4463608..4464558 (-) 951 WP_019471898.1 formate dehydrogenase subunit beta -
  N805_RS19755 (N805_19760) fdnG 4464558..4467626 (-) 3069 WP_155412706.1 formate dehydrogenase-N subunit alpha -
  N805_RS19765 (N805_19770) - 4467949..4468437 (+) 489 WP_026034496.1 GlcG/HbpS family heme-binding protein -
  N805_RS19770 (N805_19775) ssb 4468508..4469056 (-) 549 WP_016484656.1 single-stranded DNA-binding protein Machinery gene
  N805_RS19775 (N805_19780) - 4469066..4470460 (-) 1395 WP_019471894.1 MFS transporter -
  N805_RS19780 (N805_19785) uvrA 4470590..4473424 (+) 2835 WP_019471893.1 excinuclease ABC subunit UvrA -
  N805_RS19785 (N805_19790) bfr 4473497..4473961 (-) 465 WP_003257116.1 bacterioferritin -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20213.33 Da        Isoelectric Point: 5.9286

>NTDB_id=141076 N805_RS19770 WP_016484656.1 4468508..4469056(-) (ssb) [Pseudomonas putida S13.1.2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGQPQQYNQAPPRQQAQRPQQAPQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=141076 N805_RS19770 WP_016484656.1 4468508..4469056(-) (ssb) [Pseudomonas putida S13.1.2]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACTTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTATACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCGCAGGGCCAGCAGCAAGGCGGCGACCCGTACAATCAGGGTGGCGGCAACTACAACC
AGGGTGGCCAGCCACAACAGTACAACCAGGCACCGCCTCGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCA
GCGCCCCAGCAGCCTGCGCCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.219

100

0.588
  ssb Glaesserella parasuis strain SC1401

50

100

0.522
  ssb Neisseria meningitidis MC58

48.333

98.901

0.478
  ssb Neisseria gonorrhoeae MS11

48.333

98.901

0.478

Multiple sequence alignment