Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UC35_RS11100 Genome accession   NZ_CP010951
Coordinates   2297360..2297839 (+) Length   159 a.a.
NCBI ID   WP_061499347.1    Uniprot ID   A0A127JTI8
Organism   Ramlibacter tataouinensis strain 5-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2292360..2302839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC35_RS11080 (UC35_11090) - 2293509..2294075 (-) 567 WP_061499340.1 helix-turn-helix transcriptional regulator -
  UC35_RS11085 (UC35_11095) - 2294200..2294928 (+) 729 WP_061503793.1 SDR family NAD(P)-dependent oxidoreductase -
  UC35_RS11090 (UC35_11100) - 2294925..2296001 (+) 1077 WP_061499343.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  UC35_RS11095 (UC35_11105) - 2296113..2297327 (+) 1215 WP_061499346.1 MFS transporter -
  UC35_RS11100 (UC35_11110) ssb 2297360..2297839 (+) 480 WP_061499347.1 single-stranded DNA-binding protein Machinery gene
  UC35_RS11105 (UC35_11115) - 2297915..2298593 (+) 679 Protein_2233 haloacid dehalogenase type II -
  UC35_RS11110 (UC35_11120) - 2298618..2299100 (-) 483 WP_061499350.1 DUF456 domain-containing protein -
  UC35_RS11115 (UC35_11125) - 2299097..2300059 (-) 963 WP_082793045.1 LysR family transcriptional regulator -
  UC35_RS11120 (UC35_11130) - 2300190..2300549 (+) 360 WP_061499354.1 DUF4148 domain-containing protein -
  UC35_RS11125 (UC35_11135) - 2300631..2301353 (-) 723 WP_158513886.1 DUF4339 domain-containing protein -
  UC35_RS11130 (UC35_11140) mnmA 2301542..2302711 (-) 1170 WP_061499360.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17423.52 Da        Isoelectric Point: 7.0213

>NTDB_id=140857 UC35_RS11100 WP_061499347.1 2297360..2297839(+) (ssb) [Ramlibacter tataouinensis strain 5-10]
MASVNKVIIVGNLGRDPEMRSFPSGDRVANVTIATTDKWKDKQTGEMKEATEWHRVVFNGRLAEIAGEYLRKGSQVYVEG
SLRTRKWTDQQGVEKYTTEIRADTMQMLGSRQGMGGPAPDEGDGGMRRAQPAARSAPAASKPASKPSTGFDDMDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=140857 UC35_RS11100 WP_061499347.1 2297360..2297839(+) (ssb) [Ramlibacter tataouinensis strain 5-10]
ATGGCATCGGTCAACAAGGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAGATGCGCTCCTTCCCCAGCGGCGACCG
CGTCGCCAACGTCACCATTGCCACCACCGACAAGTGGAAGGACAAGCAGACCGGCGAGATGAAGGAAGCCACCGAGTGGC
ACCGCGTGGTGTTCAACGGCCGCCTGGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTACGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGCAGGGCGTCGAGAAATACACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCCCCGCCCCGGATGAGGGCGACGGCGGCATGCGCCGTGCCCAACCCGCCGCGC
GCAGCGCTCCTGCGGCCTCCAAGCCCGCGTCGAAGCCGTCCACCGGCTTCGACGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127JTI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.039

100

0.604
  ssb Glaesserella parasuis strain SC1401

49.724

100

0.566
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.484
  ssb Neisseria meningitidis MC58

42.938

100

0.478

Multiple sequence alignment