Detailed information NTG0140813

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: B723_RS28865
• Genome accession: NZ_CP010945
• Coordinates: 6352870..6355092 (-)
• Length: 740 a.a.
• NCBI ID: WP_017340130.1
• Uniprot ID: A0A0K1QWT9
• Organism: Pseudomonas fluorescens NCIMB 11764
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6347870..6360092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B723_RS28830 (B723_28880)	murB	6348244..6349263 (-)	1020	WP_017340124.1	UDP-N-acetylmuramate dehydrogenase	-
B723_RS28835 (B723_28885)	-	6349260..6349724 (-)	465	WP_017340125.1	low molecular weight protein-tyrosine-phosphatase	-
B723_RS28840 (B723_28890)	kdsB	6349724..6350488 (-)	765	WP_017340126.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
B723_RS28845 (B723_28895)	-	6350485..6350670 (-)	186	WP_007945752.1	Trm112 family protein	-
B723_RS28850 (B723_28900)	lpxK	6350695..6351705 (-)	1011	WP_017340127.1	tetraacyldisaccharide 4'-kinase	-
B723_RS28855 (B723_28905)	-	6351705..6352136 (-)	432	WP_017340128.1	biopolymer transporter ExbD	-
B723_RS28860 (B723_28910)	exbB	6352133..6352771 (-)	639	WP_017340129.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
B723_RS28865 (B723_28915)	comA	6352870..6355092 (-)	2223	WP_017340130.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
B723_RS28870 (B723_28920)	-	6355229..6355747 (+)	519	WP_017340131.1	DUF2062 domain-containing protein	-
B723_RS28875 (B723_28925)	-	6355932..6356711 (-)	780	WP_008152390.1	ABC transporter permease	-
B723_RS28880 (B723_28930)	-	6356708..6357640 (-)	933	WP_017340132.1	ABC transporter ATP-binding protein	-
B723_RS28885 (B723_28935)	-	6357774..6358397 (-)	624	WP_017340133.1	glutathione S-transferase	-
B723_RS28890 (B723_28940)	-	6358441..6359100 (-)	660	WP_017340134.1	transglutaminase family protein	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 81177.36 Da
• Isoelectric Point: 10.0701

>NTDB_id=140813 B723_RS28865 WP_017340130.1 6352870..6355092(-) (comA) [Pseudomonas fluorescens NCIMB 11764]
MRTGMMALALGLLALRFLPVLPPVWLWLVLPVVGLMVLPFRTYPVAFFLFGFSWAGANAQWALDDRLSANLDGETRWVEG
WVTGLPQNNEGVVRFELVDARSRQAKVPSLMRLAWYDGSPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGQRLAEARWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLGREDWQVLQDTGTVHLLVISGQHVGLLAGVVYLL
IAGLARYGMWPNRLPWLPWACGLAFVAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALNAVLLLDPL
VSLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLGPLLLVLGLPISLSGPVANLLAVPWISLLVLPPAL
LGTLLLPLPYVGEGLLWLAGGLIDWLFKGLGLMAGQLPAWVPVAIPLGTWALGTLGAFLLLMPRGVPLRPLGWPLLLLLV
LPPRPLLPEGIAEVWQLDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPTLHKLGVDGLDVMLLSHADADHAGGA
RAVALGLPVTRVLSGDPVALPVELHAEACESGRQWTWDDVRFQLWQWPSASDSNQKSCVLQIEANGERMLLTGDIDSAAE
RALLDSPLAVPTDWLQAPHHGSRSSSSMALLAALQPKAVLISRGNGNSFGHPHPTVMARYKKRGMAIHDSAEQGAIRLHL
GRFTPAWTMRQERRFWRSLP

Nucleotide

• Length: 2223 bp

>NTDB_id=140813 B723_RS28865 WP_017340130.1 6352870..6355092(-) (comA) [Pseudomonas fluorescens NCIMB 11764]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTGCCGGTGTTACCGCCGGTCTGGTTATG
GCTGGTGTTGCCTGTAGTGGGATTGATGGTGCTTCCGTTCCGGACGTATCCAGTGGCGTTTTTCCTGTTCGGCTTCAGTT
GGGCGGGCGCGAATGCGCAGTGGGCGCTGGATGATCGACTGTCGGCGAATCTCGATGGCGAAACCCGTTGGGTCGAAGGC
TGGGTGACGGGATTACCGCAGAATAATGAAGGTGTTGTGCGTTTCGAGTTGGTGGACGCCCGGTCGCGACAGGCAAAAGT
GCCTTCACTGATGCGCCTGGCCTGGTACGACGGATCACCGGTCAACAGTGGCGAACGCTGGCGGCTGGCGGTGAAATTGA
AGCGTCCTGCCGGGCTGCTCAATCCCCATGCCTTCGATTACGACGCCTGGCTTCTGGCGCAACGCATCGGTGCAACCGGG
ACCGTCAAGGATGGCCAGCGTCTTGCCGAAGCCCGGTGGGCCTGGCGTGACGGCATCCGCCAACGCTTGCAAGCCGTGGA
CGCTCAGGGGCGAACCGGTGCACTGACGGCGCTGGTGCTGGGGGATGGCGCCGGGCTTGGTCGCGAGGATTGGCAGGTGT
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACGTCGGTCTACTGGCAGGCGTGGTGTATCTGCTG
ATCGCCGGGCTGGCTCGCTACGGTATGTGGCCGAATCGCTTGCCGTGGCTGCCATGGGCGTGCGGACTGGCATTCGTCGC
TGCCCTTGGTTACGGACTGCTGGCAGGATTCGAAGTACCGGTGCGGCGAGCCTGCGTAATGATCGGGCTGGTGCTGTTGT
GGCGCCTTCGATTTCGCCACCTCGGTGCCTGGTGGCCGTTGTTGCTGGCGCTCAACGCGGTGTTGTTGCTGGATCCGCTG
GTGAGTCTGCAACCGGGTTTCTGGTTGTCCTTCGCGGCGGTGGCGGTGTTGATCTTCACCTTCGGCGGGCGCCTAGGCCC
TTGGCGGTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGATCGCAATCGGCCTGGGCCCGCTGCTGCTGGTGCTGGGAC
TGCCGATCAGTCTCAGCGGGCCGGTCGCCAATCTGCTTGCAGTGCCCTGGATCAGTTTGCTGGTCTTGCCGCCGGCGTTG
CTGGGGACCCTGTTGTTACCGCTGCCTTATGTGGGCGAGGGGTTGCTGTGGCTGGCGGGCGGGTTGATCGACTGGCTGTT
CAAGGGCCTTGGGCTGATGGCTGGCCAATTGCCCGCGTGGGTGCCCGTGGCAATTCCATTGGGGACATGGGCATTGGGCA
CCCTTGGCGCGTTTCTGTTGTTGATGCCGCGTGGCGTACCGCTGCGCCCGCTGGGTTGGCCGCTGTTGCTGTTGCTGGTT
TTGCCACCCCGGCCACTGTTGCCAGAGGGGATCGCCGAAGTCTGGCAACTGGATGTCGGTCAGGGGTTGGCTATCCTGGT
GCGGACTCGCCATCACACGCTGTTGTATGACACCGGCCCGCGCTTCGGCGACTTCGACCTCGGCGAGCGAGTGGTGCTGC
CCACCTTGCACAAACTGGGCGTGGACGGACTCGACGTGATGTTGCTTAGCCACGCCGATGCCGATCACGCCGGCGGTGCG
CGAGCGGTTGCCCTGGGCTTGCCGGTGACGCGAGTGCTCAGCGGCGACCCCGTGGCCTTGCCCGTCGAATTGCACGCCGA
GGCCTGCGAGAGTGGCCGGCAATGGACGTGGGACGACGTGAGGTTTCAGCTCTGGCAATGGCCTTCTGCCTCGGACAGCA
ATCAAAAATCCTGTGTCCTGCAGATCGAAGCCAATGGCGAACGCATGCTGCTGACGGGGGATATCGACAGCGCCGCCGAA
CGGGCCCTGCTTGACAGTCCGCTGGCCGTGCCCACCGACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGTTCGTCGTC
GATGGCGCTGCTTGCCGCGTTGCAGCCCAAAGCGGTGCTGATCTCGCGCGGCAACGGCAATTCCTTCGGTCATCCGCATC
CTACGGTCATGGCCCGTTATAAAAAACGCGGCATGGCGATCCATGACAGCGCCGAGCAAGGCGCCATTCGTCTGCACCTC
GGACGCTTCACGCCAGCATGGACAATGCGTCAGGAACGGCGTTTCTGGCGCTCCCTGCCATAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-462)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

3D structure

• AlphaFold DB: A0A0K1QWT9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.693	96.351	0.604
comA	Ralstonia pseudosolanacearum GMI1000	34.173	100	0.385