Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B723_RS28860 Genome accession   NZ_CP010945
Coordinates   6352133..6352771 (-) Length   212 a.a.
NCBI ID   WP_017340129.1    Uniprot ID   A0A0K1QXL2
Organism   Pseudomonas fluorescens NCIMB 11764     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6347133..6357771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B723_RS28825 (B723_28875) - 6347528..6347998 (-) 471 WP_017340123.1 (2Fe-2S)-binding protein -
  B723_RS28830 (B723_28880) murB 6348244..6349263 (-) 1020 WP_017340124.1 UDP-N-acetylmuramate dehydrogenase -
  B723_RS28835 (B723_28885) - 6349260..6349724 (-) 465 WP_017340125.1 low molecular weight protein-tyrosine-phosphatase -
  B723_RS28840 (B723_28890) kdsB 6349724..6350488 (-) 765 WP_017340126.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B723_RS28845 (B723_28895) - 6350485..6350670 (-) 186 WP_007945752.1 Trm112 family protein -
  B723_RS28850 (B723_28900) lpxK 6350695..6351705 (-) 1011 WP_017340127.1 tetraacyldisaccharide 4'-kinase -
  B723_RS28855 (B723_28905) - 6351705..6352136 (-) 432 WP_017340128.1 biopolymer transporter ExbD -
  B723_RS28860 (B723_28910) exbB 6352133..6352771 (-) 639 WP_017340129.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B723_RS28865 (B723_28915) comA 6352870..6355092 (-) 2223 WP_017340130.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B723_RS28870 (B723_28920) - 6355229..6355747 (+) 519 WP_017340131.1 DUF2062 domain-containing protein -
  B723_RS28875 (B723_28925) - 6355932..6356711 (-) 780 WP_008152390.1 ABC transporter permease -
  B723_RS28880 (B723_28930) - 6356708..6357640 (-) 933 WP_017340132.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23053.30 Da        Isoelectric Point: 7.3618

>NTDB_id=140812 B723_RS28860 WP_017340129.1 6352133..6352771(-) (exbB) [Pseudomonas fluorescens NCIMB 11764]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKRA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=140812 B723_RS28860 WP_017340129.1 6352133..6352771(-) (exbB) [Pseudomonas fluorescens NCIMB 11764]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTGTGGACCCTGCGTGCCAGCCGTGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAACTGCGTGCCAACTCGCCGCTGGGCGAGATTCTGGCGGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCTGCGCGGGTGATTCACGAGCTCGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGTTGCTCGGGCTGTTGGGCACGGTGTTGGGCATGATCGATATTTTCA
GCGCGTTCATGGGCACGGGCATGGGCACCAACGCTGCGGTGCTGGCCGGTGGTATTTCCAAGGCCTTGATCACCACGGCC
GCAGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGTTGGTCGAGGTGGTGCAGGGTGATCGTGACGTGGACCTGGCTGAGGGCAAAAGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K1QXL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.714

99.057

0.849

Multiple sequence alignment