Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PF1751_RS24825 Genome accession   NZ_CP010896
Coordinates   5462664..5463179 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas simiae strain PCL1751     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5457664..5468179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF1751_RS29035 - 5459059..5459313 (-) 255 WP_069673118.1 hypothetical protein -
  PF1751_RS24820 (PF1751_v1c49190) - 5459310..5461658 (-) 2349 WP_226994531.1 DUF637 domain-containing protein -
  PF1751_RS29040 (PF1751_v1c49200) - 5462313..5462600 (-) 288 WP_010206872.1 hypothetical protein -
  PF1751_RS24825 (PF1751_v1c49210) ssb 5462664..5463179 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  PF1751_RS24830 (PF1751_v1c49220) - 5463189..5464583 (-) 1395 WP_010206876.1 MFS transporter -
  PF1751_RS24835 (PF1751_v1c49230) uvrA 5464762..5467596 (+) 2835 WP_010206877.1 excinuclease ABC subunit UvrA -
  PF1751_RS24840 (PF1751_v1c49240) bfr 5467663..5468127 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=140701 PF1751_RS24825 WP_003232445.1 5462664..5463179(-) (ssb) [Pseudomonas simiae strain PCL1751]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=140701 PF1751_RS24825 WP_003232445.1 5462664..5463179(-) (ssb) [Pseudomonas simiae strain PCL1751]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACTGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCTGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACCAACAAGGCCAAGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGCCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGCCCAGCGCCACAACAGGCTGCCCCGCAACCGGCTCCG
GATTTTGACAGCTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment