Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   TO66_RS28005 Genome accession   NZ_CP010892
Coordinates   6152571..6153074 (-) Length   167 a.a.
NCBI ID   WP_044465320.1    Uniprot ID   -
Organism   Pseudomonas sp. MRSN 12121 strain MRSN12121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6147571..6158074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO66_RS27980 (TO66_27970) - 6147726..6148721 (+) 996 WP_044465315.1 lysylphosphatidylglycerol synthase domain-containing protein -
  TO66_RS27985 (TO66_27975) - 6148786..6149541 (-) 756 WP_044465316.1 S9 family peptidase -
  TO66_RS27990 (TO66_27980) - 6149531..6150640 (-) 1110 WP_044465317.1 DUF3182 family protein -
  TO66_RS27995 (TO66_27985) - 6150820..6151827 (-) 1008 WP_044465318.1 GlxA family transcriptional regulator -
  TO66_RS28000 (TO66_27990) - 6151931..6152482 (+) 552 WP_044465319.1 cysteine hydrolase family protein -
  TO66_RS28005 (TO66_27995) ssb 6152571..6153074 (-) 504 WP_044465320.1 single-stranded DNA-binding protein Machinery gene
  TO66_RS28010 (TO66_28000) - 6153084..6154478 (-) 1395 WP_044465321.1 MFS transporter -
  TO66_RS28015 (TO66_28005) uvrA 6154659..6157493 (+) 2835 WP_044465322.1 excinuclease ABC subunit UvrA -
  TO66_RS28020 (TO66_28010) bfr 6157556..6158020 (-) 465 WP_044465323.1 bacterioferritin -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18573.70 Da        Isoelectric Point: 5.9314

>NTDB_id=140678 TO66_RS28005 WP_044465320.1 6152571..6153074(-) (ssb) [Pseudomonas sp. MRSN 12121 strain MRSN12121]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNAAPRPQQSRPQPSQAPQRPAPQQSSPQPAQNFDDS
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=140678 TO66_RS28005 WP_044465320.1 6152571..6153074(-) (ssb) [Pseudomonas sp. MRSN 12121 strain MRSN12121]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACGCCGCACCGCGTCCGCAGCAGTCGC
GTCCGCAGCCTTCCCAGGCGCCACAGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTCGACGACAGC
TTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.25

100

0.593
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.539
  ssb Neisseria meningitidis MC58

49.432

100

0.521
  ssb Neisseria gonorrhoeae MS11

48.864

100

0.515

Multiple sequence alignment