Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   TO66_RS08880 Genome accession   NZ_CP010892
Coordinates   1957120..1957755 (+) Length   211 a.a.
NCBI ID   WP_044461983.1    Uniprot ID   A0A0C5E5N8
Organism   Pseudomonas sp. MRSN 12121 strain MRSN12121     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1952120..1962755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO66_RS08860 (TO66_08850) - 1952366..1953298 (+) 933 WP_044461979.1 ABC transporter ATP-binding protein -
  TO66_RS08865 (TO66_08855) - 1953295..1954074 (+) 780 WP_044461980.1 ABC transporter permease -
  TO66_RS08870 (TO66_08860) - 1954123..1954638 (-) 516 WP_044461981.1 DUF2062 domain-containing protein -
  TO66_RS08875 (TO66_08865) comA 1954786..1957017 (+) 2232 WP_044461982.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TO66_RS08880 (TO66_08870) exbB 1957120..1957755 (+) 636 WP_044461983.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  TO66_RS08885 (TO66_08875) - 1957752..1958180 (+) 429 WP_044461984.1 biopolymer transporter ExbD -
  TO66_RS08890 (TO66_08880) lpxK 1958180..1959190 (+) 1011 WP_044461985.1 tetraacyldisaccharide 4'-kinase -
  TO66_RS08895 (TO66_08885) - 1959215..1959400 (+) 186 WP_044461986.1 Trm112 family protein -
  TO66_RS08900 (TO66_08890) kdsB 1959397..1960161 (+) 765 WP_044461987.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  TO66_RS08905 (TO66_08895) - 1960161..1960625 (+) 465 WP_044461988.1 low molecular weight protein-tyrosine-phosphatase -
  TO66_RS08910 (TO66_08900) murB 1960622..1961641 (+) 1020 WP_044461989.1 UDP-N-acetylmuramate dehydrogenase -
  TO66_RS08915 (TO66_08905) - 1961895..1962365 (+) 471 WP_044461990.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23041.24 Da        Isoelectric Point: 8.1263

>NTDB_id=140667 TO66_RS08880 WP_044461983.1 1957120..1957755(+) (exbB) [Pseudomonas sp. MRSN 12121 strain MRSN12121]
MWELVKSGGWMMLPIILSSIVAVAIVAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=140667 TO66_RS08880 WP_044461983.1 1957120..1957755(+) (exbB) [Pseudomonas sp. MRSN 12121 strain MRSN12121]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCGGTGGCCATCGTCGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGCGTCACGCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTCAATAAGGACAAGCTCAAGGAACTGCGCGCCCATTCTCCCCTGGGAGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACCT
CAACGCCCTGGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCCATGTTCTGGCGGGTGGTATTTCCAAGGCGCTGATCACCACCGCG
TCCGGACTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C5E5N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment