Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   TQ29_RS08465 Genome accession   NZ_CP010869
Coordinates   1728038..1728532 (-) Length   164 a.a.
NCBI ID   WP_054538793.1    Uniprot ID   A0A840CDF0
Organism   Actibacterium sp. EMB200-NS6 strain EMBL200_NS6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1723038..1733532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQ29_RS21105 - 1724354..1724488 (-) 135 WP_255353416.1 hypothetical protein -
  TQ29_RS08445 (TQ29_08455) - 1724614..1725159 (+) 546 WP_082386580.1 shikimate kinase -
  TQ29_RS08450 (TQ29_08460) aroB 1725162..1726271 (+) 1110 WP_054538790.1 3-dehydroquinate synthase -
  TQ29_RS08455 (TQ29_08465) - 1726407..1726814 (+) 408 WP_157445553.1 hypothetical protein -
  TQ29_RS08460 (TQ29_08470) - 1726924..1728003 (-) 1080 WP_054538792.1 site-2 protease family protein -
  TQ29_RS08465 (TQ29_08475) ssb 1728038..1728532 (-) 495 WP_054538793.1 single-stranded DNA-binding protein Machinery gene
  TQ29_RS08470 (TQ29_08480) - 1728776..1729087 (+) 312 WP_054538794.1 PepSY domain-containing protein -
  TQ29_RS08475 (TQ29_08485) - 1729234..1729818 (+) 585 WP_054538795.1 lytic transglycosylase domain-containing protein -
  TQ29_RS08480 (TQ29_08490) - 1729819..1730154 (-) 336 WP_054538796.1 antibiotic biosynthesis monooxygenase -
  TQ29_RS08485 (TQ29_08495) - 1730151..1731092 (-) 942 WP_173585961.1 DMT family transporter -
  TQ29_RS08490 (TQ29_08500) - 1731188..1733272 (-) 2085 WP_054538798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17684.40 Da        Isoelectric Point: 5.3622

>NTDB_id=140421 TQ29_RS08465 WP_054538793.1 1728038..1728532(-) (ssb) [Actibacterium sp. EMB200-NS6 strain EMBL200_NS6]
MAGSVNKVILVGNLGRDPEVRSFQNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFSEPLARIAEQYLRKGSKVYI
EGQLETRKWQDQSGADRYSTEVVLRPYKGELTLLDSRGESSGGGGGGQGGGYGGGYDSGRSERDFGGGPSGPAPAGDLDD
EIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=140421 TQ29_RS08465 WP_054538793.1 1728038..1728532(-) (ssb) [Actibacterium sp. EMB200-NS6 strain EMBL200_NS6]
ATGGCTGGATCGGTGAACAAGGTAATTCTGGTGGGCAACCTGGGCCGAGACCCGGAGGTGCGGAGCTTTCAGAATGGCGG
CAAGGTCTGCAACCTGCGGATCGCCACATCCGAAAACTGGAAAGACCGCAACACCGGCGAGCGGCGGGAAAAGACCGAAT
GGCACTCGGTCGCGATCTTTTCGGAACCTCTGGCGCGGATCGCCGAGCAATATCTGCGCAAAGGCTCGAAAGTGTATATC
GAGGGCCAGCTCGAAACCCGCAAATGGCAGGATCAGAGCGGCGCCGACCGCTATTCGACAGAGGTTGTGCTGCGCCCCTA
CAAGGGCGAGCTGACGCTTCTGGATAGCCGCGGCGAAAGCAGCGGCGGTGGCGGCGGCGGTCAGGGTGGCGGCTATGGCG
GCGGCTACGATTCCGGCCGGTCGGAGCGTGATTTCGGCGGCGGCCCCTCGGGCCCGGCGCCGGCAGGCGATCTGGATGAC
GAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A840CDF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.265

100

0.579
  ssb Vibrio cholerae strain A1552

49.711

100

0.524
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.463
  ssb Neisseria meningitidis MC58

42.458

100

0.463

Multiple sequence alignment