Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RDF_RS08455 | Genome accession | NZ_CP010867 |
| Coordinates | 1679916..1680407 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609586.1 | Uniprot ID | A0AAD2WUV1 |
| Organism | Streptococcus agalactiae strain SS1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1674916..1685407
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RDF_RS08440 (RDF_1637) | - | 1677822..1678493 (-) | 672 | WP_000174844.1 | DUF1129 domain-containing protein | - |
| RDF_RS08445 (RDF_1638) | - | 1678518..1679462 (-) | 945 | WP_000812124.1 | magnesium transporter CorA family protein | - |
| RDF_RS08450 (RDF_1639) | rpsR | 1679632..1679871 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| RDF_RS08455 (RDF_1640) | ssb | 1679916..1680407 (-) | 492 | WP_000609586.1 | single-stranded DNA-binding protein | Machinery gene |
| RDF_RS08460 (RDF_1641) | rpsF | 1680419..1680706 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| RDF_RS08465 (RDF_1642) | mutY | 1681769..1682923 (+) | 1155 | WP_016480119.1 | A/G-specific adenine glycosylase | - |
| RDF_RS08470 (RDF_1643) | - | 1683100..1683693 (+) | 594 | WP_000402392.1 | helix-turn-helix domain-containing protein | - |
| RDF_RS08475 (RDF_1644) | trxA | 1683739..1684071 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| RDF_RS08480 (RDF_1645) | - | 1684134..1684634 (-) | 501 | WP_000446806.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18155.77 Da Isoelectric Point: 4.9119
>NTDB_id=140410 RDF_RS08455 WP_000609586.1 1679916..1680407(-) (ssb) [Streptococcus agalactiae strain SS1]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=140410 RDF_RS08455 WP_000609586.1 1679916..1680407(-) (ssb) [Streptococcus agalactiae strain SS1]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.638 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.286 |
100 |
0.626 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |