Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | ASZ87_RS14065 | Genome accession | NZ_CP013309 |
| Coordinates | 2950948..2951952 (+) | Length | 334 a.a. |
| NCBI ID | WP_000568491.1 | Uniprot ID | Q9KR02 |
| Organism | Vibrio cholerae strain E1162 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2945948..2956952
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASZ87_RS14040 (ASZ87_02706) | lpxH | 2946772..2947512 (-) | 741 | WP_000557000.1 | UDP-2,3-diacylglucosamine diphosphatase | - |
| ASZ87_RS14045 (ASZ87_02707) | - | 2947553..2948047 (-) | 495 | WP_000631302.1 | peptidylprolyl isomerase | - |
| ASZ87_RS14050 (ASZ87_02708) | cysS | 2948193..2949572 (+) | 1380 | WP_000913180.1 | cysteine--tRNA ligase | - |
| ASZ87_RS14055 (ASZ87_02709) | ruvC | 2949660..2950181 (+) | 522 | WP_000111361.1 | crossover junction endodeoxyribonuclease RuvC | - |
| ASZ87_RS14060 (ASZ87_02710) | ruvA | 2950278..2950892 (+) | 615 | WP_000580359.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| ASZ87_RS14065 (ASZ87_02711) | ruvB | 2950948..2951952 (+) | 1005 | WP_000568491.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| ASZ87_RS14070 (ASZ87_02713) | cydA | 2952411..2953997 (+) | 1587 | WP_000568056.1 | cytochrome ubiquinol oxidase subunit I | - |
| ASZ87_RS14075 (ASZ87_02714) | cydB | 2954015..2955151 (+) | 1137 | WP_000460767.1 | cytochrome d ubiquinol oxidase subunit II | - |
| ASZ87_RS14080 (ASZ87_02715) | cydX | 2955164..2955271 (+) | 108 | WP_000270285.1 | cytochrome bd-I oxidase subunit CydX | - |
| ASZ87_RS14085 | ybgE | 2955264..2955581 (+) | 318 | WP_001286617.1 | cyd operon protein YbgE | - |
| ASZ87_RS14090 (ASZ87_02716) | ybgC | 2955750..2956157 (+) | 408 | WP_001091290.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| ASZ87_RS14095 (ASZ87_02717) | tolQ | 2956147..2956830 (+) | 684 | WP_000123084.1 | protein TolQ | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37298.75 Da Isoelectric Point: 5.0460
>NTDB_id=140352 ASZ87_RS14065 WP_000568491.1 2950948..2951952(+) (ruvB) [Vibrio cholerae strain E1162]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK
Nucleotide
Download Length: 1005 bp
>NTDB_id=140352 ASZ87_RS14065 WP_000568491.1 2950948..2951952(+) (ruvB) [Vibrio cholerae strain E1162]
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTCTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCACAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTCTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCACAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.682 |
96.108 |
0.593 |
| ruvB | Streptococcus pneumoniae TIGR4 |
59.937 |
94.91 |
0.569 |
| ruvB | Streptococcus pneumoniae R6 |
59.937 |
94.91 |
0.569 |
| ruvB | Streptococcus pneumoniae D39 |
59.937 |
94.91 |
0.569 |
| ruvB | Synechocystis sp. PCC 6803 |
55.663 |
92.515 |
0.515 |
| ruvB | Helicobacter pylori 26695 |
54.276 |
91.018 |
0.494 |