Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TO73_RS07135 Genome accession   NZ_CP010822
Coordinates   1333451..1334671 (-) Length   406 a.a.
NCBI ID   WP_040684304.1    Uniprot ID   -
Organism   Thermus aquaticus Y51MC23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1328451..1339671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO73_RS07105 (TO73_1472) - 1328986..1329942 (-) 957 WP_003045985.1 GGDEF domain-containing protein -
  TO73_RS07110 (TO73_1473) - 1329991..1331334 (-) 1344 WP_003045987.1 FAD-binding oxidoreductase -
  TO73_RS13505 (TO73_1474) - 1331491..1331988 (-) 498 WP_231623770.1 DDE transposase family protein -
  TO73_RS13510 (TO73_1475) - 1332027..1332575 (-) 549 WP_040684303.1 transposase family protein -
  TO73_RS07125 (TO73_1476) - 1332591..1332953 (-) 363 WP_003045993.1 hypothetical protein -
  TO73_RS07130 (TO73_1477) - 1333024..1333476 (+) 453 WP_003045994.1 EVE domain-containing protein -
  TO73_RS07135 (TO73_1478) pilC 1333451..1334671 (-) 1221 WP_040684304.1 type II secretion system F family protein Machinery gene
  TO73_RS07140 (TO73_1479) - 1334670..1335260 (+) 591 WP_003045999.1 L-threonylcarbamoyladenylate synthase -
  TO73_RS07145 (TO73_1480) scpB 1335253..1335774 (+) 522 WP_003046001.1 SMC-Scp complex subunit ScpB -
  TO73_RS07150 (TO73_1481) - 1335721..1336803 (-) 1083 WP_003046004.1 PIG-L deacetylase family protein -
  TO73_RS07155 (TO73_1482) - 1336832..1337458 (+) 627 WP_003046006.1 GNAT family N-acetyltransferase -
  TO73_RS07160 (TO73_1483) - 1337468..1338625 (+) 1158 WP_003046008.1 acyl-CoA dehydrogenase family protein -
  TO73_RS07165 (TO73_1484) holA 1338650..1339549 (+) 900 WP_003046010.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44768.76 Da        Isoelectric Point: 9.7003

>NTDB_id=140106 TO73_RS07135 WP_040684304.1 1333451..1334671(-) (pilC) [Thermus aquaticus Y51MC23]
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGRGLQAEVRLPALERGPGLKDLAIFSRQLATMIGA
GLTLLQSLAILEKQTENKKFREIIKEVRTDIEGGMAFSDALAKHKLFSRLYVNLVRAGETSGGLDVILDRLAAFLEKELE
LRGKIRSAMTYPTIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVSEFLRAATLPLLLLFVALFFAYRWY
YGTPQGRKVIDRIKLRIPVFGNLNRKTAIARFSRTLALLLASGVNILEALDITKGTAGNSVVEEIINTAKNKVQQGEPLN
LTLAQHPFVFPPMVSSMVAIGEETGALDTLLSKIADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSTQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=140106 TO73_RS07135 WP_040684304.1 1333451..1334671(-) (pilC) [Thermus aquaticus Y51MC23]
ATGCCGGTCTACCAGTATAAGGCCCGCGACCGCCAGGGCCGCCTGGTGGAGGCCACCATTGAGGCCGAGGACCTGCGCAC
CGCAGCCCGGCTTTTAAGGGACCGGGGCCTCTTTGTGGCCGAGATCAAGGAGCCGGGGCGGGGCCTTCAGGCCGAGGTGC
GCCTGCCCGCTCTGGAGCGGGGGCCGGGGCTTAAGGACCTGGCCATCTTCTCCCGCCAGCTGGCCACCATGATCGGGGCC
GGCCTCACCCTCCTCCAGTCCCTGGCCATCTTGGAAAAGCAGACCGAGAACAAGAAGTTCCGGGAGATCATCAAGGAGGT
GCGCACCGACATAGAGGGCGGTATGGCCTTCTCCGACGCCCTGGCCAAGCACAAGCTCTTCTCCCGGCTTTACGTGAACC
TGGTGCGGGCGGGGGAGACCTCGGGCGGTCTGGACGTGATCCTGGACCGCCTGGCCGCCTTCCTGGAGAAGGAGCTTGAG
CTCAGGGGCAAGATCCGTAGCGCCATGACCTACCCCACCATCGTCTTCGTCTTCGCCGTGGGCGTGGCCTACTTTCTCCT
CACGGGGATCGTGCCCCAGTTCGCCCAGATCCTCACCGACCTGGGCTCGGAGCTCCCCCTCCTCACCCGCTTCCTCATCG
CCGTTTCCGAGTTCCTCCGGGCCGCCACCCTGCCCCTTCTCCTCCTCTTCGTGGCCCTCTTCTTCGCCTACCGCTGGTAC
TATGGCACCCCCCAGGGGCGGAAGGTGATAGATCGCATCAAGCTGAGGATCCCCGTCTTCGGCAACCTGAACCGCAAGAC
CGCCATCGCCCGCTTCTCCCGCACCCTGGCCCTGCTCCTCGCAAGCGGCGTCAACATCCTCGAGGCCCTGGACATCACCA
AGGGCACCGCCGGCAACAGCGTGGTGGAGGAAATCATCAACACCGCCAAAAACAAGGTGCAGCAGGGCGAGCCTCTGAAC
CTCACCCTGGCCCAGCACCCCTTCGTCTTCCCCCCCATGGTGAGCTCCATGGTGGCCATCGGCGAGGAGACCGGGGCCCT
GGACACCCTCCTCTCCAAGATCGCCGACTTCTACGAGCGGGAGGTGGACGAGGCCGTGGCCAGCCTCACCGCCGCCATTG
AGCCCCTGATGATCATCTTCCTGGGCGTCATCGTGGGCATGATCGTGGCCGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGGACCCTTTCCACCCAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-192)

Type II secretion system (T2SS), protein F (T2SSF)

(272-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

91.872

100

0.919
  pilC Legionella pneumophila strain ERS1305867

37.624

99.507

0.374
  pilC Acinetobacter baylyi ADP1

36.973

99.261

0.367
  pilC Pseudomonas stutzeri DSM 10701

36.842

98.276

0.362

Multiple sequence alignment