Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APQ13_RS03010 Genome accession   NZ_CP013237
Coordinates   620849..621529 (+) Length   226 a.a.
NCBI ID   WP_002262284.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 615849..626529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS02990 (APQ13_02985) - 616724..617056 (+) 333 WP_002262279.1 putative DNA-binding protein -
  APQ13_RS02995 (APQ13_02990) ffh 617167..618705 (+) 1539 WP_002273945.1 signal recognition particle protein -
  APQ13_RS09825 - 619028..619252 (+) 225 WP_002269248.1 hypothetical protein -
  APQ13_RS03000 (APQ13_02995) - 619349..620017 (+) 669 WP_002269990.1 SatD family protein -
  APQ13_RS03005 (APQ13_03000) - 620014..620751 (+) 738 WP_002262283.1 DUF3307 domain-containing protein -
  APQ13_RS03010 (APQ13_03005) radC 620849..621529 (+) 681 WP_002262284.1 RadC family protein Machinery gene
  APQ13_RS03015 (APQ13_03010) - 621526..622221 (-) 696 WP_002266741.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  APQ13_RS03020 (APQ13_03015) - 622245..622886 (-) 642 WP_002262286.1 redox-sensing transcriptional repressor Rex -
  APQ13_RS03025 (APQ13_03020) - 623182..623529 (-) 348 WP_002262287.1 DUF1831 domain-containing protein -
  APQ13_RS03030 (APQ13_03025) - 623531..624649 (-) 1119 WP_002269033.1 cysteine desulfurase family protein -
  APQ13_RS03035 (APQ13_03030) - 624653..625633 (-) 981 WP_002263830.1 ribose-phosphate diphosphokinase -
  APQ13_RS03040 (APQ13_03035) - 625736..626302 (-) 567 WP_002262290.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25949.01 Da        Isoelectric Point: 7.4741

>NTDB_id=139656 APQ13_RS03010 WP_002262284.1 620849..621529(+) (radC) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MYSIHSAKEALLPRERLMTYGPESLSNQELLAILLRTGTKKEHVLNLSIKILNGLDSLADFRSLSLEELQEIEGIGQVRS
VEIKAMLELSKRINQAEYNFKERILSSERLAKIMMSELGDKRQEHLIAIYLDTQNRVIKKQVIFIGSVRRSVAEPREILH
YACKSMATSLIIVHNHPSGSTYPSENDLRFTEKIKRSCDDLGIVFLDHIIVGKKEYYSFREETDLV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=139656 APQ13_RS03010 WP_002262284.1 620849..621529(+) (radC) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGTATTCAATTCATTCTGCAAAAGAAGCACTATTGCCTAGAGAACGTCTCATGACTTATGGTCCTGAAAGTTTGAGTAA
TCAAGAATTATTGGCTATATTATTGCGAACTGGTACTAAAAAGGAACATGTTCTCAATCTCTCAATAAAAATTTTAAATG
GTCTAGATAGCTTGGCCGATTTTCGCAGCTTATCCTTAGAAGAACTGCAGGAAATTGAGGGAATCGGTCAAGTACGATCA
GTAGAAATTAAAGCTATGTTGGAATTGTCCAAAAGAATCAATCAAGCTGAATACAATTTTAAAGAACGTATTTTAAGCAG
CGAACGTTTAGCTAAAATAATGATGAGTGAATTAGGCGATAAGAGACAGGAACACCTTATTGCTATATATCTTGACACTC
AAAATCGTGTGATAAAAAAACAAGTCATTTTTATTGGCAGCGTCAGACGATCTGTTGCTGAACCCCGAGAAATCCTTCAT
TATGCTTGTAAAAGTATGGCAACATCACTTATTATTGTCCATAATCATCCTTCAGGTTCAACTTATCCAAGCGAGAATGA
CCTGCGATTTACAGAAAAAATAAAACGATCCTGTGATGATTTAGGAATCGTCTTTTTAGATCATATTATTGTCGGGAAAA
AAGAATATTACAGTTTTCGTGAGGAAACAGATCTTGTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(5-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

60.793

100

0.611
  radC Streptococcus pneumoniae TIGR4

58.407

100

0.584
  radC Streptococcus pneumoniae R6

57.965

100

0.58
  radC Streptococcus pneumoniae D39

57.965

100

0.58
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.81

92.92

0.407