Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HSISS4_RS07060 Genome accession   NZ_CP013216
Coordinates   1573803..1574489 (-) Length   228 a.a.
NCBI ID   WP_002886831.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568803..1579489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS07030 (HSISS4_01371) - 1568971..1569546 (+) 576 WP_002886838.1 CYTH domain-containing protein -
  HSISS4_RS07035 (HSISS4_01372) - 1569820..1570791 (+) 972 WP_021143806.1 ribose-phosphate diphosphokinase -
  HSISS4_RS07040 (HSISS4_01373) - 1570795..1571907 (+) 1113 WP_021143805.1 cysteine desulfurase family protein -
  HSISS4_RS07045 (HSISS4_01374) - 1571909..1572256 (+) 348 WP_002884733.1 DUF1831 domain-containing protein -
  HSISS4_RS07050 (HSISS4_01375) - 1572398..1573057 (+) 660 WP_002884205.1 redox-sensing transcriptional repressor Rex -
  HSISS4_RS07055 (HSISS4_01376) - 1573050..1573745 (+) 696 WP_021143804.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  HSISS4_RS07060 (HSISS4_01377) radC 1573803..1574489 (-) 687 WP_002886831.1 RadC family protein Machinery gene
  HSISS4_RS07065 (HSISS4_01378) - 1574540..1576324 (-) 1785 WP_021143803.1 rhamnan synthesis F family protein -
  HSISS4_RS07070 (HSISS4_01379) - 1576321..1577355 (-) 1035 WP_021143802.1 glycosyltransferase family 2 protein -
  HSISS4_RS07075 (HSISS4_01380) - 1577375..1578580 (-) 1206 WP_002891458.1 ABC transporter ATP-binding protein -
  HSISS4_RS07080 (HSISS4_01381) - 1578580..1579389 (-) 810 WP_021143801.1 ABC transporter permease -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25807.85 Da        Isoelectric Point: 6.7542

>NTDB_id=139511 HSISS4_RS07060 WP_002886831.1 1573803..1574489(-) (radC) [Streptococcus salivarius strain HSISS4]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILKGMTSLADLSRLSLNELQEIPGIGRVKS
IELKAMVELAKRIEKAELSRSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=139511 HSISS4_RS07060 WP_002886831.1 1573803..1574489(-) (radC) [Streptococcus salivarius strain HSISS4]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAACGACTCTTACAGAAGGGAGCAGAGGTTTTGTCGGA
CCAAGAGCTGTTGGCGATAGTGCTGCGGACAGGGACCAAGTCTGAGTCGGTTCTATCTATGGCCAATCGTATTTTGAAAG
GAATGACGAGTTTGGCGGATTTGTCTCGTTTGTCCTTGAATGAGCTTCAGGAGATTCCTGGTATTGGACGTGTGAAGTCT
ATTGAGCTCAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGTCTCGTTCTGAGCAGATTATGTCCAG
TCAGCAGGTGGCTCGTCGTATGATGTTGGATATTGGGGACAAGCCTCAGGAGCATCTGGTGGCTATCTATTTGGATACGC
AGAATCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGTGTTCGCCGTTCGATTGCCGAGCCACGTGAGATTTTACAT
TATGCTTGTCATCTGATGGCAACGTCCTTGATTGTGGTTCACAATCATCCGTCGGGCGAGGCTTATCCGAGTCGAAATGA
TATTGATTTTACGCAAAAGATTAAGCGGTCTTGTGATGATTTGGGGATTTGTCTGCTTGATCATCTGATTGTTGGCAAAT
CGACCTATTATTCTTTTCGTGAGGAGAGGGAGGATTTTGAGCTTTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(105-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.929

98.246

0.579
  radC Streptococcus pneumoniae R6

58.482

98.246

0.575
  radC Streptococcus pneumoniae D39

58.482

98.246

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

58.108

97.368

0.566
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.143

92.105

0.434