Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   HSISS4_RS01680 Genome accession   NZ_CP013216
Coordinates   330077..330739 (+) Length   220 a.a.
NCBI ID   WP_021143585.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325077..335739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS01655 (HSISS4_00291) - 325415..326125 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  HSISS4_RS01660 (HSISS4_00292) - 326260..326919 (+) 660 WP_002890017.1 CBS and ACT domain-containing protein -
  HSISS4_RS01665 (HSISS4_00293) cysK 327068..327994 (-) 927 WP_002883742.1 cysteine synthase A -
  HSISS4_RS01670 (HSISS4_00294) - 328096..328722 (-) 627 WP_021143583.1 YigZ family protein -
  HSISS4_RS01675 (HSISS4_00295) comFA/cflA 328777..330096 (+) 1320 WP_021143584.1 DEAD/DEAH box helicase Machinery gene
  HSISS4_RS01680 (HSISS4_00296) comFC/cflB 330077..330739 (+) 663 WP_021143585.1 ComF family protein Machinery gene
  HSISS4_RS01685 (HSISS4_00297) hpf 330818..331366 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26135.45 Da        Isoelectric Point: 8.5995

>NTDB_id=139466 HSISS4_RS01680 WP_021143585.1 330077..330739(+) (comFC/cflB) [Streptococcus salivarius strain HSISS4]
MKCLLCNDWIESLPKLRELIMFNQRKEYSCRSCKHQFKNLSKERCQNCNKELYGDACIDCKLWMKKGYIPKHLAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQDIKNNLKPFLKKGYTIVPVPLSEERLAERGFNQVEGLIEGIPYRDIFEKRDIEKQSS
KTREERLSQDNAFCLKEGINLPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=139466 HSISS4_RS01680 WP_021143585.1 330077..330739(+) (comFC/cflB) [Streptococcus salivarius strain HSISS4]
ATGAAGTGTCTGCTATGTAATGATTGGATTGAATCACTACCAAAATTAAGAGAACTCATTATGTTTAACCAAAGAAAAGA
GTACTCTTGCCGATCATGTAAACATCAGTTTAAAAACCTCTCAAAAGAAAGATGTCAAAATTGTAATAAAGAGTTATATG
GAGATGCTTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCTATTTATCGATATGAGGAA
AATATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAATATTTCAACAAGATATTAAAAA
CAACTTAAAACCATTTTTGAAGAAAGGTTATACCATAGTGCCAGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TCAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCGGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCCTCA
AAAACACGCGAGGAGCGTCTAAGTCAAGATAATGCCTTCTGTCTCAAGGAAGGTATAAATCTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACGGGTTCCACTTTATATCAGATGGTTCAACTGTTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.445
  comFC/cflB Streptococcus mitis SK321

43.694

100

0.441