Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SD98_RS29110 Genome accession   NZ_CP010577
Coordinates   5628014..5628535 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5623014..5633535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD98_RS29090 (SD98_29155) rplI 5624224..5624670 (-) 447 WP_000864237.1 50S ribosomal protein L9 -
  SD98_RS29095 (SD98_29160) - 5624667..5626640 (-) 1974 WP_001113785.1 DHH family phosphoesterase -
  SD98_RS29100 (SD98_29165) - 5626719..5627654 (-) 936 WP_044798204.1 YybS family protein -
  SD98_RS29105 (SD98_29170) rpsR 5627735..5627968 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  SD98_RS29110 (SD98_29175) ssbA 5628014..5628535 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  SD98_RS29115 (SD98_29180) rpsF 5628562..5628852 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  SD98_RS29120 (SD98_29185) ychF 5629044..5630144 (-) 1101 WP_000524658.1 redox-regulated ATPase YchF -
  SD98_RS29125 (SD98_29190) - 5630260..5630457 (-) 198 WP_000435486.1 DUF951 domain-containing protein -
  SD98_RS29130 (SD98_29195) - 5630481..5631362 (-) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  SD98_RS29135 (SD98_29200) yyaC 5631622..5632218 (+) 597 WP_001020711.1 spore protease YyaC -
  SD98_RS29140 (SD98_29205) spo0J 5632239..5633090 (-) 852 WP_001051833.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=139387 SD98_RS29110 WP_000981963.1 5628014..5628535(-) (ssbA) [Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=139387 SD98_RS29110 WP_000981963.1 5628014..5628535(-) (ssbA) [Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTGTATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment