Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PG1C_RS10775 Genome accession   NZ_CP010554
Coordinates   2151093..2151542 (-) Length   149 a.a.
NCBI ID   WP_202634777.1    Uniprot ID   A0A0C5J9Y9
Organism   Rugosibacter aromaticivorans strain Ca6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2146093..2156542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG1C_RS10750 (PG1C_10535) - 2146632..2147210 (-) 579 WP_202634774.1 YceI family protein -
  PG1C_RS10755 (PG1C_10540) - 2147207..2148022 (-) 816 WP_202634775.1 DODA-type extradiol aromatic ring-opening family dioxygenase -
  PG1C_RS10760 (PG1C_10545) - 2148043..2148996 (+) 954 WP_284431755.1 LysR family transcriptional regulator -
  PG1C_RS10765 (PG1C_10550) - 2149172..2149372 (-) 201 Protein_2127 IS5/IS1182 family transposase -
  PG1C_RS10770 (PG1C_10555) - 2149654..2150973 (-) 1320 WP_202634776.1 TAXI family TRAP transporter solute-binding subunit -
  PG1C_RS10775 (PG1C_10560) ssb 2151093..2151542 (-) 450 WP_202634777.1 single-stranded DNA-binding protein Machinery gene
  PG1C_RS10780 (PG1C_10565) - 2151575..2152807 (-) 1233 WP_237218157.1 MFS transporter -
  PG1C_RS10785 (PG1C_10570) uvrA 2152901..2155768 (+) 2868 WP_202634778.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16522.51 Da        Isoelectric Point: 5.9568

>NTDB_id=139184 PG1C_RS10775 WP_202634777.1 2151093..2151542(-) (ssb) [Rugosibacter aromaticivorans strain Ca6]
MASVNKVILVGNLGKDPESRYMPNGDAVVNITLATTDTWKDKGTGEKKEATEWHRVVFFRKLAEIAGQYLKKGSQVYIEG
SLKTRKWQDKEGQDRYTTEIVADTMQMLGSRQGMSDAPPRESSRAAEAPAKPASASSSTFNDFEDDIPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=139184 PG1C_RS10775 WP_202634777.1 2151093..2151542(-) (ssb) [Rugosibacter aromaticivorans strain Ca6]
ATGGCCTCAGTAAATAAAGTGATTCTGGTTGGTAACCTGGGTAAAGACCCCGAGTCGCGCTATATGCCGAACGGCGACGC
CGTGGTAAATATTACGCTGGCCACCACCGATACGTGGAAGGATAAAGGAACAGGCGAAAAGAAAGAGGCGACCGAGTGGC
ACCGCGTGGTGTTCTTCCGCAAGCTGGCCGAAATTGCCGGTCAATACCTGAAAAAAGGCTCACAGGTGTATATCGAAGGG
TCGCTCAAAACGCGCAAGTGGCAGGACAAAGAGGGCCAGGATCGCTACACCACCGAAATCGTTGCCGATACGATGCAGAT
GCTGGGTTCGCGGCAAGGCATGAGCGATGCCCCGCCGCGCGAAAGCTCGCGTGCTGCTGAAGCGCCTGCTAAACCGGCGA
GTGCTAGTAGCAGCACCTTCAATGATTTCGAGGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C5J9Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.367

100

0.658
  ssb Glaesserella parasuis strain SC1401

50.556

100

0.611
  ssb Neisseria meningitidis MC58

46.067

100

0.55
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.544

Multiple sequence alignment