Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | PG1C_RS04160 | Genome accession | NZ_CP010554 |
| Coordinates | 799944..801299 (+) | Length | 451 a.a. |
| NCBI ID | WP_202636145.1 | Uniprot ID | - |
| Organism | Rugosibacter aromaticivorans strain Ca6 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 794944..806299
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PG1C_RS04135 (PG1C_04030) | - | 795031..796044 (+) | 1014 | WP_202636142.1 | sensor histidine kinase | - |
| PG1C_RS04140 (PG1C_04035) | - | 796041..796805 (+) | 765 | WP_202636143.1 | LytR/AlgR family response regulator transcription factor | - |
| PG1C_RS04145 (PG1C_04040) | - | 797029..797958 (+) | 930 | WP_284431807.1 | polyprenyl synthetase family protein | - |
| PG1C_RS14970 | - | 798149..798361 (+) | 213 | WP_414629200.1 | PP0621 family protein | - |
| PG1C_RS04155 (PG1C_04050) | - | 798358..799953 (+) | 1596 | WP_202636144.1 | sensor histidine kinase | - |
| PG1C_RS04160 (PG1C_04055) | pilR | 799944..801299 (+) | 1356 | WP_202636145.1 | sigma-54-dependent transcriptional regulator | Regulator |
| PG1C_RS04165 (PG1C_04060) | ampD | 801296..801856 (+) | 561 | WP_202636146.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| PG1C_RS04170 (PG1C_04065) | - | 802111..802665 (+) | 555 | WP_202636147.1 | histone H1-like DNA-binding protein | - |
| PG1C_RS04180 (PG1C_04075) | - | 803121..804329 (-) | 1209 | WP_202636148.1 | aromatic amino acid transaminase | - |
Sequence
Protein
Download Length: 451 a.a. Molecular weight: 49940.25 Da Isoelectric Point: 5.8998
>NTDB_id=139178 PG1C_RS04160 WP_202636145.1 799944..801299(+) (pilR) [Rugosibacter aromaticivorans strain Ca6]
MSLKIQRRRRGEANRILIVDDEADIRELIDLTLVRMGLEVDCAGSLVEARTMLASHRYQLCLTDMRLPDGTGLDLVRHVN
EVMADLPVAVMTAYGSTENAVAALKEGAFDYVTKPVSLDQLRGLVKLALELSGTESVSGANAEARLLGDSPAMQQVRALI
ERVARSQAPVHITGESGSGKELAAQLIHQLGARRDRAFVPVNCGAIPENLMESEFFGYRRGAFTGANEDRDGFFQAANGG
TLFLDEVADLSLAMQVKLLRVIQEKRVRKVGATTEEDVDVRVICATHQDIKALVNEGRFRQDLFYRLNVIELRMPALREC
HEDIPLLATHILDRLAHAAGIRPPLLSLAALKELRTHPFPGNVRELENILERALALMDGSYIEAADLSLRSSRPENESTA
TTLQDKLDQVERQMILDALQEANNNRTAAARLLGVTFRSLRYRMARLGMNE
MSLKIQRRRRGEANRILIVDDEADIRELIDLTLVRMGLEVDCAGSLVEARTMLASHRYQLCLTDMRLPDGTGLDLVRHVN
EVMADLPVAVMTAYGSTENAVAALKEGAFDYVTKPVSLDQLRGLVKLALELSGTESVSGANAEARLLGDSPAMQQVRALI
ERVARSQAPVHITGESGSGKELAAQLIHQLGARRDRAFVPVNCGAIPENLMESEFFGYRRGAFTGANEDRDGFFQAANGG
TLFLDEVADLSLAMQVKLLRVIQEKRVRKVGATTEEDVDVRVICATHQDIKALVNEGRFRQDLFYRLNVIELRMPALREC
HEDIPLLATHILDRLAHAAGIRPPLLSLAALKELRTHPFPGNVRELENILERALALMDGSYIEAADLSLRSSRPENESTA
TTLQDKLDQVERQMILDALQEANNNRTAAARLLGVTFRSLRYRMARLGMNE
Nucleotide
Download Length: 1356 bp
>NTDB_id=139178 PG1C_RS04160 WP_202636145.1 799944..801299(+) (pilR) [Rugosibacter aromaticivorans strain Ca6]
ATGTCTTTGAAAATCCAGCGGCGTCGGCGCGGAGAAGCTAATCGCATTTTGATCGTGGATGACGAGGCAGATATTCGTGA
GCTAATTGATCTAACGCTCGTGCGCATGGGGCTTGAGGTTGATTGCGCGGGATCATTGGTAGAAGCCCGCACCATGCTGG
CAAGCCATCGTTATCAACTTTGTTTGACTGATATGCGGTTGCCCGATGGTACAGGGCTAGATCTCGTGCGCCATGTTAAT
GAGGTTATGGCCGACTTGCCGGTGGCTGTGATGACGGCGTATGGCAGCACCGAAAATGCGGTTGCAGCACTGAAGGAAGG
TGCTTTTGATTACGTCACGAAGCCAGTGTCACTTGATCAGCTAAGAGGCTTGGTCAAGCTGGCATTAGAGTTGTCAGGAA
CAGAGTCGGTTTCTGGTGCAAACGCTGAGGCCAGGCTTCTCGGCGATTCGCCCGCGATGCAACAGGTGCGTGCCCTCATT
GAGCGCGTCGCACGCAGTCAGGCCCCCGTCCATATCACGGGTGAATCTGGGAGCGGAAAAGAATTGGCCGCGCAATTAAT
CCATCAGCTAGGTGCGCGTCGTGATCGTGCGTTTGTGCCGGTAAATTGCGGTGCTATTCCCGAAAACTTGATGGAGAGTG
AGTTCTTCGGTTATCGCAGGGGGGCATTTACAGGGGCCAATGAAGATCGCGATGGTTTTTTTCAGGCAGCCAATGGGGGA
ACATTGTTTCTCGACGAAGTGGCAGACTTATCTTTAGCGATGCAAGTAAAGCTGTTGCGCGTGATTCAGGAAAAGCGGGT
GCGCAAAGTCGGCGCGACAACCGAAGAGGATGTCGACGTGCGTGTGATCTGTGCGACCCATCAGGACATCAAAGCACTGG
TTAATGAAGGGCGTTTTCGTCAGGATCTTTTTTACCGGTTGAATGTGATTGAATTACGTATGCCCGCACTCCGTGAGTGT
CATGAAGATATTCCGTTGCTGGCAACACATATTCTTGACCGGCTAGCCCATGCAGCTGGTATAAGGCCGCCATTGCTTTC
TCTTGCTGCTTTAAAGGAGTTACGGACTCATCCCTTCCCCGGGAATGTGCGTGAGCTCGAAAACATCCTCGAGAGGGCGT
TGGCGTTGATGGATGGCAGCTATATCGAAGCGGCTGATCTCAGCCTACGGTCATCTCGCCCTGAAAATGAATCGACAGCA
ACAACGTTGCAGGACAAGCTGGATCAGGTTGAGCGCCAAATGATTTTGGATGCGCTTCAAGAAGCAAATAACAATCGTAC
TGCAGCTGCCCGTTTGCTAGGGGTCACTTTCCGTTCCCTACGCTATCGTATGGCTCGTCTGGGCATGAACGAATGA
ATGTCTTTGAAAATCCAGCGGCGTCGGCGCGGAGAAGCTAATCGCATTTTGATCGTGGATGACGAGGCAGATATTCGTGA
GCTAATTGATCTAACGCTCGTGCGCATGGGGCTTGAGGTTGATTGCGCGGGATCATTGGTAGAAGCCCGCACCATGCTGG
CAAGCCATCGTTATCAACTTTGTTTGACTGATATGCGGTTGCCCGATGGTACAGGGCTAGATCTCGTGCGCCATGTTAAT
GAGGTTATGGCCGACTTGCCGGTGGCTGTGATGACGGCGTATGGCAGCACCGAAAATGCGGTTGCAGCACTGAAGGAAGG
TGCTTTTGATTACGTCACGAAGCCAGTGTCACTTGATCAGCTAAGAGGCTTGGTCAAGCTGGCATTAGAGTTGTCAGGAA
CAGAGTCGGTTTCTGGTGCAAACGCTGAGGCCAGGCTTCTCGGCGATTCGCCCGCGATGCAACAGGTGCGTGCCCTCATT
GAGCGCGTCGCACGCAGTCAGGCCCCCGTCCATATCACGGGTGAATCTGGGAGCGGAAAAGAATTGGCCGCGCAATTAAT
CCATCAGCTAGGTGCGCGTCGTGATCGTGCGTTTGTGCCGGTAAATTGCGGTGCTATTCCCGAAAACTTGATGGAGAGTG
AGTTCTTCGGTTATCGCAGGGGGGCATTTACAGGGGCCAATGAAGATCGCGATGGTTTTTTTCAGGCAGCCAATGGGGGA
ACATTGTTTCTCGACGAAGTGGCAGACTTATCTTTAGCGATGCAAGTAAAGCTGTTGCGCGTGATTCAGGAAAAGCGGGT
GCGCAAAGTCGGCGCGACAACCGAAGAGGATGTCGACGTGCGTGTGATCTGTGCGACCCATCAGGACATCAAAGCACTGG
TTAATGAAGGGCGTTTTCGTCAGGATCTTTTTTACCGGTTGAATGTGATTGAATTACGTATGCCCGCACTCCGTGAGTGT
CATGAAGATATTCCGTTGCTGGCAACACATATTCTTGACCGGCTAGCCCATGCAGCTGGTATAAGGCCGCCATTGCTTTC
TCTTGCTGCTTTAAAGGAGTTACGGACTCATCCCTTCCCCGGGAATGTGCGTGAGCTCGAAAACATCCTCGAGAGGGCGT
TGGCGTTGATGGATGGCAGCTATATCGAAGCGGCTGATCTCAGCCTACGGTCATCTCGCCCTGAAAATGAATCGACAGCA
ACAACGTTGCAGGACAAGCTGGATCAGGTTGAGCGCCAAATGATTTTGGATGCGCTTCAAGAAGCAAATAACAATCGTAC
TGCAGCTGCCCGTTTGCTAGGGGTCACTTTCCGTTCCCTACGCTATCGTATGGCTCGTCTGGGCATGAACGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
57.111 |
98.226 |
0.561 |
| pilR | Acinetobacter baumannii strain A118 |
46.405 |
100 |
0.472 |
| luxO | Vibrio cholerae strain A1552 |
37.5 |
97.561 |
0.366 |