Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RR42_RS02155 Genome accession   NZ_CP010536
Coordinates   479549..480103 (+) Length   184 a.a.
NCBI ID   WP_043343468.1    Uniprot ID   -
Organism   Cupriavidus basilensis strain 4G11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 474549..485103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR42_RS02145 (RR42_m0440) uvrA 474837..477701 (-) 2865 WP_043343466.1 excinuclease ABC subunit UvrA -
  RR42_RS02150 (RR42_m0441) - 478095..479351 (+) 1257 WP_043343467.1 MFS transporter -
  RR42_RS02155 (RR42_m0442) ssb 479549..480103 (+) 555 WP_043343468.1 single-stranded DNA-binding protein Machinery gene
  RR42_RS02160 (RR42_m0443) - 480232..481215 (-) 984 WP_043343469.1 tripartite tricarboxylate transporter substrate binding protein -
  RR42_RS02165 (RR42_m0444) - 481318..482256 (-) 939 WP_043343471.1 LysR substrate-binding domain-containing protein -
  RR42_RS02170 (RR42_m0445) - 482439..483209 (+) 771 WP_052494411.1 sulfite exporter TauE/SafE family protein -
  RR42_RS02175 (RR42_m0446) - 483230..484855 (-) 1626 WP_043343473.1 thiamine pyrophosphate-binding protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19051.88 Da        Isoelectric Point: 5.9566

>NTDB_id=139142 RR42_RS02155 WP_043343468.1 479549..480103(+) (ssb) [Cupriavidus basilensis strain 4G11]
MASINKVILVGNLGADPETRYLPSGDAVSNIRLATTDRYKDKTSGEMKEATEWHRIAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWTDQSGAEKYSTEIVAEQMQMLGSRQGMGGGGGGGDDMGGGGGGYGGGRESSGGGGYGGGARSGGGQAAGGQQG
AGGARRQQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=139142 RR42_RS02155 WP_043343468.1 479549..480103(+) (ssb) [Cupriavidus basilensis strain 4G11]
ATGGCATCGATCAACAAAGTCATCCTCGTCGGCAACCTGGGCGCGGATCCGGAAACCCGCTACCTGCCCAGCGGCGACGC
CGTGAGCAACATCCGCCTGGCGACCACCGATCGTTACAAGGACAAGACCAGCGGCGAGATGAAGGAAGCCACCGAGTGGC
ACCGCATCGCCTTCTTTGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATATCGAAGGG
CGCATCCGCACCCGCAAGTGGACCGACCAGTCCGGCGCGGAAAAGTACAGCACCGAGATCGTGGCTGAGCAAATGCAGAT
GCTGGGCTCGCGCCAGGGCATGGGCGGCGGCGGTGGCGGTGGCGACGACATGGGCGGTGGCGGCGGTGGCTACGGTGGTG
GCCGCGAATCGTCGGGCGGCGGTGGTTACGGCGGCGGTGCGCGCAGTGGTGGCGGCCAGGCTGCCGGTGGCCAGCAGGGT
GCCGGTGGCGCGCGTCGCCAGCAGCAGGCTCCGTCGAATGGCTTTGAAGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.474

100

0.511
  ssb Glaesserella parasuis strain SC1401

46.524

100

0.473
  ssb Neisseria meningitidis MC58

44.262

99.457

0.44
  ssb Neisseria gonorrhoeae MS11

44.262

99.457

0.44

Multiple sequence alignment