Detailed information NTG0137834

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: SAST39_RS08290
• Genome accession: NZ_CP012970
• Coordinates: 1682802..1683488 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692870.1
• Uniprot ID: Q8NW77
• Organism: Staphylococcus aureus strain ST20130939
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1677802..1688488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAST39_RS08250 (SAST39_01701)	rpmA	1678572..1678856 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SAST39_RS08255 (SAST39_01702)	-	1678868..1679188 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SAST39_RS08260 (SAST39_03326)	rplU	1679194..1679502 (-)	309	WP_000457384.1	50S ribosomal protein L21	-
SAST39_RS08265 (SAST39_01705)	mreD	1679738..1680268 (-)	531	WP_001259923.1	rod shape-determining protein MreD	-
SAST39_RS08270 (SAST39_04069)	mreC	1680268..1681110 (-)	843	WP_000911030.1	rod shape-determining protein MreC	-
SAST39_RS08275 (SAST39_03327)	-	1681310..1681429 (-)	120	WP_000840602.1	hypothetical protein	-
SAST39_RS08280 (SAST39_03328)	-	1681503..1681976 (-)	474	WP_001236734.1	DUF4930 family protein	-
SAST39_RS14160	-	1682136..1682333 (+)	198	WP_000025835.1	hypothetical protein	-
SAST39_RS08285 (SAST39_03329)	-	1682450..1682734 (-)	285	WP_000171854.1	hypothetical protein	-
SAST39_RS08290 (SAST39_01710)	ysxA/radC	1682802..1683488 (-)	687	WP_000692870.1	RadC family protein	Machinery gene
SAST39_RS08295 (SAST39_01711)	-	1683485..1684192 (-)	708	WP_000261115.1	prepilin peptidase	-
SAST39_RS08305 (SAST39_03331)	-	1684462..1685733 (-)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
SAST39_RS08310 (SAST39_01714)	-	1685746..1688376 (-)	2631	WP_000425364.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.28 Da
• Isoelectric Point: 7.0539

>NTDB_id=137834 SAST39_RS08290 WP_000692870.1 1682802..1683488(-) (ysxA/radC) [Staphylococcus aureus strain ST20130939]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=137834 SAST39_RS08290 WP_000692870.1 1682802..1683488(-) (ysxA/radC) [Staphylococcus aureus strain ST20130939]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTTCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

3D structure

• AlphaFold DB: Q8NW77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377