Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | ACT74_RS06020 | Genome accession | NZ_CP012958 |
| Coordinates | 1286766..1287779 (-) | Length | 337 a.a. |
| NCBI ID | WP_005545577.1 | Uniprot ID | A0A142G245 |
| Organism | Aggregatibacter actinomycetemcomitans strain VT1169 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1281766..1292779
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACT74_RS05995 (ACT74_05985) | ybgC | 1282320..1282724 (-) | 405 | WP_005545583.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| ACT74_RS06000 (ACT74_05990) | ybgE | 1282840..1283118 (-) | 279 | WP_005587199.1 | cyd operon protein YbgE | - |
| ACT74_RS10665 | - | 1283123..1283221 (-) | 99 | WP_019518193.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| ACT74_RS06005 (ACT74_05995) | cydB | 1283233..1284369 (-) | 1137 | WP_005542295.1 | cytochrome d ubiquinol oxidase subunit II | - |
| ACT74_RS06010 (ACT74_06000) | - | 1284384..1285949 (-) | 1566 | WP_061869926.1 | cytochrome ubiquinol oxidase subunit I | - |
| ACT74_RS06015 (ACT74_06005) | - | 1286401..1286712 (+) | 312 | WP_005542297.1 | DUF5339 domain-containing protein | - |
| ACT74_RS06020 (ACT74_06010) | ruvB | 1286766..1287779 (-) | 1014 | WP_005545577.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| ACT74_RS06025 (ACT74_06015) | ruvA | 1287794..1288408 (-) | 615 | WP_005545575.1 | Holliday junction branch migration protein RuvA | - |
| ACT74_RS06030 (ACT74_06020) | ruvC | 1288472..1289044 (-) | 573 | WP_005545573.1 | crossover junction endodeoxyribonuclease RuvC | - |
| ACT74_RS06035 (ACT74_06025) | - | 1289100..1289510 (-) | 411 | WP_005545571.1 | hypothetical protein | - |
| ACT74_RS06040 (ACT74_06030) | - | 1289522..1290262 (-) | 741 | WP_005567678.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| ACT74_RS06045 (ACT74_06035) | nudB | 1290296..1290742 (-) | 447 | WP_005542305.1 | dihydroneopterin triphosphate diphosphatase | - |
| ACT74_RS06050 (ACT74_06040) | - | 1290848..1292116 (-) | 1269 | WP_005571754.1 | NRAMP family divalent metal transporter | - |
Sequence
Protein
Download Length: 337 a.a. Molecular weight: 37378.90 Da Isoelectric Point: 4.7954
>NTDB_id=137683 ACT74_RS06020 WP_005545577.1 1286766..1287779(-) (ruvB) [Aggregatibacter actinomycetemcomitans strain VT1169]
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
Nucleotide
Download Length: 1014 bp
>NTDB_id=137683 ACT74_RS06020 WP_005545577.1 1286766..1287779(-) (ruvB) [Aggregatibacter actinomycetemcomitans strain VT1169]
ATGATTGAAGCAGACAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCCATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGCTGATTTTTGGCCCGCCGGGTTTGGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGCCCCGTGCTGGAAAAAGCGGGGGATTTGGCGGCAATGTTGACCAATCTGGAGCCTCA
TGATGTGTTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCTATTAAATTGGATTTACCTCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTC
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACAGCAGCTTATGAAATCGCCC
GCCGTTCTCGCGGCACGCCACGGATTGCCAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGACGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGACGTATTGGAACCATACTTAATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTTGGTATTGAGAAAATTACTCGCGAAGATTAA
ATGATTGAAGCAGACAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCCATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGCTGATTTTTGGCCCGCCGGGTTTGGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGCCCCGTGCTGGAAAAAGCGGGGGATTTGGCGGCAATGTTGACCAATCTGGAGCCTCA
TGATGTGTTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCTATTAAATTGGATTTACCTCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTC
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACAGCAGCTTATGAAATCGCCC
GCCGTTCTCGCGGCACGCCACGGATTGCCAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGACGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGACGTATTGGAACCATACTTAATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTTGGTATTGAGAAAATTACTCGCGAAGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.774 |
97.033 |
0.599 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.282 |
96.736 |
0.564 |
| ruvB | Streptococcus pneumoniae R6 |
58.282 |
96.736 |
0.564 |
| ruvB | Streptococcus pneumoniae D39 |
58.282 |
96.736 |
0.564 |
| ruvB | Helicobacter pylori 26695 |
55.987 |
91.691 |
0.513 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
91.691 |
0.504 |