Detailed information NTG0137362

Bioinformatically predicted

Overview

• Name: comR
• Type: Regulator
• Locus tag: APQ97_RS00805
• Genome accession: NZ_CP012911
• Coordinates: 127904..128821 (+)
• Length: 305 a.a.
• NCBI ID: WP_002935296.1
• Uniprot ID: -
• Organism: Streptococcus suis strain NSUI060
• Function: activate transcription of comX (predicted from homology) Competence regulation

Genomic Context

Location: 122904..133821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APQ97_RS00785 (APQ97_00785)	-	122988..124700 (+)	1713	WP_002935303.1	ABC transporter ATP-binding protein	-
APQ97_RS12510	-	124802..124975 (+)	174	WP_002935301.1	hypothetical protein	-
APQ97_RS00790 (APQ97_00790)	ruvB	125270..126271 (+)	1002	WP_002935300.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
APQ97_RS00795 (APQ97_00795)	-	126271..127017 (+)	747	WP_002935299.1	GNAT family N-acetyltransferase	-
APQ97_RS00800 (APQ97_00800)	-	127019..127657 (+)	639	WP_002935298.1	HAD-IA family hydrolase	-
APQ97_RS00805 (APQ97_00805)	comR	127904..128821 (+)	918	WP_002935296.1	helix-turn-helix domain-containing protein	Regulator
APQ97_RS00810 (APQ97_00810)	-	129230..130432 (-)	1203	WP_002935295.1	IS110-like element ISSsu7 family transposase	-
APQ97_RS00815 (APQ97_00815)	-	130679..131386 (+)	708	Protein_128	amino acid ABC transporter permease	-
APQ97_RS00820 (APQ97_00820)	-	131386..132129 (+)	744	WP_013730659.1	amino acid ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 36252.32 Da
• Isoelectric Point: 4.6744

>NTDB_id=137362 APQ97_RS00805 WP_002935296.1 127904..128821(+) (comR) [Streptococcus suis strain NSUI060]
MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEDLAEKRDAMMTEIYDDYYDELPEEEKIVVDTLCSLFDVLDTDSQEYGKEILDDYLHQSYHRSKLSIND
LMILRLFIEHCQLEDLSVGTSNYALFTDLIEKLPQSIYDVHSESLFIVRDLFLAIVRILFSKELYNHIPVYIEKIENIME
LSQDFQKKPILNLVKWKYELKVQHNHEIAERYYNEAITFASLLNQFHLKEKLQMEWEKDTQSLKR

Nucleotide

• Length: 918 bp

>NTDB_id=137362 APQ97_RS00805 WP_002935296.1 127904..128821(+) (comR) [Streptococcus suis strain NSUI060]
ATGAACGATAAGGAGTTTGGACAGCGTGTGCGTCAATTACGAGAATCTGCTAGTATGACACGTGAACAGTTTTGTGACGA
TGAACTGGAACTCTCTGTGCGCCAATTAACTCGTATTGAAGCAGGTGCTTCCAAGCCGACTTTTTCAAAGATTCAGTATA
TTGCAACTCGTTTAGGTATGGGACTTTACGAGCTTATGCCAGATTATGTATCTTTACCCGAAAGATATTCCAAGCTGAAG
TTTGATGTGCTTCGCACCCCAACTTATGGTAATGAAGATTTGGCGGAAAAGCGAGATGCCATGATGACAGAAATCTATGA
CGATTATTATGATGAATTGCCTGAGGAGGAGAAAATAGTTGTAGACACCCTATGTTCCCTATTTGATGTATTGGATACAG
ATAGCCAGGAATACGGTAAAGAAATTCTTGATGATTATTTACATCAAAGCTATCACCGTTCCAAACTATCTATAAACGAT
TTAATGATTTTGCGATTATTTATTGAACATTGTCAGTTGGAGGATTTATCTGTTGGAACTTCCAATTATGCTTTATTTAC
AGATTTGATAGAGAAATTGCCTCAATCAATCTATGATGTACATTCGGAATCCTTATTCATTGTCCGCGATTTATTTCTAG
CTATTGTTCGTATTTTATTTTCGAAGGAGTTGTATAATCATATTCCAGTCTATATAGAAAAAATAGAAAACATCATGGAA
TTATCACAAGATTTTCAGAAGAAGCCAATTCTAAATCTTGTGAAATGGAAATATGAATTAAAGGTACAACATAATCATGA
AATTGCTGAGAGGTACTATAATGAAGCGATTACATTTGCCAGCCTACTAAATCAATTTCACTTGAAAGAAAAACTGCAAA
TGGAATGGGAAAAAGATACGCAGAGTCTAAAAAGATGA

Domains

Predicted by InterProScan.

• Helix-turn-helix domain (HTH_31) (5-60)

• ComR tetratricopeptide (ComR_TPR) (73-296)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR	Streptococcus suis D9	100	100	1
comR	Streptococcus suis P1/7	62.126	98.689	0.613
comR	Streptococcus suis 05ZYH33	62.126	98.689	0.613
comR	Streptococcus mutans UA159	37	98.361	0.364