Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Achr_RS17495 Genome accession   NZ_CP010415
Coordinates   3877946..3878443 (-) Length   165 a.a.
NCBI ID   WP_039806092.1    Uniprot ID   A0A0C4WQA5
Organism   Azotobacter chroococcum NCIMB 8003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3872946..3883443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Achr_RS17470 (Achr_34730) - 3873544..3874482 (-) 939 WP_039806082.1 NAD-dependent epimerase/dehydratase family protein -
  Achr_RS17475 (Achr_34740) - 3874475..3875359 (-) 885 WP_039806088.1 sugar nucleotide-binding protein -
  Achr_RS17480 - 3875672..3875965 (-) 294 WP_052263976.1 hypothetical protein -
  Achr_RS17485 (Achr_34750) - 3876101..3876838 (-) 738 WP_039806090.1 SDR family oxidoreductase -
  Achr_RS17490 (Achr_34760) - 3876969..3877892 (+) 924 WP_039806091.1 LysR family transcriptional regulator -
  Achr_RS17495 (Achr_34770) ssb 3877946..3878443 (-) 498 WP_039806092.1 single-stranded DNA-binding protein Machinery gene
  Achr_RS17500 (Achr_34780) - 3878453..3879841 (-) 1389 WP_039806094.1 MFS transporter -
  Achr_RS17505 (Achr_34790) uvrA 3879956..3882790 (+) 2835 WP_039806096.1 excinuclease ABC subunit UvrA -
  Achr_RS17510 (Achr_34800) rplQ 3882892..3883281 (-) 390 WP_039806099.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18435.36 Da        Isoelectric Point: 5.2852

>NTDB_id=136994 Achr_RS17495 WP_039806092.1 3877946..3878443(-) (ssb) [Azotobacter chroococcum NCIMB 8003]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDAWKDKQTGQQQERTEWHRVVFFGKLAEIAGEYLRKGSQCYVE
GRLQTRKWQGQDGQDRYTTEIVVDMNGTLQLLGGRGGNTDDAPRAPRPPREPQQQAQAPQSRPAPQQDRQPPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=136994 Achr_RS17495 WP_039806092.1 3877946..3878443(-) (ssb) [Azotobacter chroococcum NCIMB 8003]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGATCGGCAACGTCGGCGGCGACCCGGAAACCCGGTATCTGCCCAATGGCAA
TGCGGTCACCAATATCACCCTGGCCACCACCGACGCCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCAAGCTCGCCGAGATCGCCGGCGAATACCTGCGCAAGGGCTCGCAGTGCTACGTCGAG
GGGCGTCTGCAGACCCGCAAGTGGCAGGGCCAGGATGGTCAGGACCGCTACACCACCGAAATCGTCGTCGACATGAACGG
CACCCTGCAGCTGCTCGGCGGCCGCGGTGGCAACACCGACGACGCCCCCCGCGCGCCGCGTCCCCCGCGCGAGCCGCAGC
AGCAGGCCCAGGCTCCGCAGTCGCGTCCCGCCCCGCAGCAGGACCGGCAGCCGCCGGCGCCGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C4WQA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.192

100

0.624
  ssb Glaesserella parasuis strain SC1401

49.727

100

0.552
  ssb Neisseria gonorrhoeae MS11

43.407

100

0.479
  ssb Neisseria meningitidis MC58

44.886

100

0.479

Multiple sequence alignment