Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RU84_RS01570 Genome accession   NZ_CP010397
Coordinates   339455..340273 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain 6200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334455..345273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU84_RS19900 - 335037..335167 (-) 131 Protein_296 hypothetical protein -
  RU84_RS01540 (RU84_01540) rpoZ 335206..335484 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RU84_RS01545 (RU84_01545) gmk 335557..336186 (-) 630 WP_000015937.1 guanylate kinase -
  RU84_RS01550 (RU84_01550) ispH 336309..337259 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RU84_RS01555 (RU84_01555) fimU 337429..337902 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RU84_RS01560 (RU84_01560) pilV 337896..338456 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RU84_RS01565 (RU84_01565) pilW 338457..339458 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  RU84_RS01570 (RU84_01570) pilX 339455..340273 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RU84_RS01575 (RU84_01575) pilY1 340285..344139 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  RU84_RS01580 (RU84_01580) pilY2 344152..344634 (+) 483 WP_029424121.1 type IV pilin protein Machinery gene
  RU84_RS01585 (RU84_01585) pilE 344631..345056 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=136764 RU84_RS01570 WP_000149377.1 339455..340273(+) (pilX) [Acinetobacter baumannii strain 6200]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=136764 RU84_RS01570 WP_000149377.1 339455..340273(+) (pilX) [Acinetobacter baumannii strain 6200]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCTACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment