Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RU84_RS01585 Genome accession   NZ_CP010397
Coordinates   344631..345056 (+) Length   141 a.a.
NCBI ID   WP_005130737.1    Uniprot ID   A0AAX0TXJ3
Organism   Acinetobacter baumannii strain 6200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339631..350056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU84_RS01575 (RU84_01575) pilY1 340285..344139 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  RU84_RS01580 (RU84_01580) pilY2 344152..344634 (+) 483 WP_029424121.1 type IV pilin protein Machinery gene
  RU84_RS01585 (RU84_01585) pilE 344631..345056 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene
  RU84_RS01590 (RU84_01590) rpsP 345203..345454 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RU84_RS01595 (RU84_01595) rimM 345474..346022 (+) 549 WP_005130741.1 ribosome maturation factor RimM -
  RU84_RS01600 (RU84_01600) trmD 346068..346808 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RU84_RS01605 (RU84_01605) rplS 347016..347384 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RU84_RS01610 (RU84_01610) - 347437..348378 (-) 942 WP_086221420.1 lipase family alpha/beta hydrolase -
  RU84_RS01615 (RU84_01615) - 348493..349524 (-) 1032 WP_029424123.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15191.34 Da        Isoelectric Point: 7.1291

>NTDB_id=136767 RU84_RS01585 WP_005130737.1 344631..345056(+) (pilE) [Acinetobacter baumannii strain 6200]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLHKGHRTAVQSEMMNIAQTLESQKMVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=136767 RU84_RS01585 WP_005130737.1 344631..345056(+) (pilE) [Acinetobacter baumannii strain 6200]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCATAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.163

100

0.972
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511

Multiple sequence alignment