Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RU84_RS01565 Genome accession   NZ_CP010397
Coordinates   338457..339458 (+) Length   333 a.a.
NCBI ID   WP_002132301.1    Uniprot ID   A0AAX0TUC3
Organism   Acinetobacter baumannii strain 6200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333457..344458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU84_RS19900 - 335037..335167 (-) 131 Protein_296 hypothetical protein -
  RU84_RS01540 (RU84_01540) rpoZ 335206..335484 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RU84_RS01545 (RU84_01545) gmk 335557..336186 (-) 630 WP_000015937.1 guanylate kinase -
  RU84_RS01550 (RU84_01550) ispH 336309..337259 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RU84_RS01555 (RU84_01555) fimU 337429..337902 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RU84_RS01560 (RU84_01560) pilV 337896..338456 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RU84_RS01565 (RU84_01565) pilW 338457..339458 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  RU84_RS01570 (RU84_01570) pilX 339455..340273 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RU84_RS01575 (RU84_01575) pilY1 340285..344139 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35846.52 Da        Isoelectric Point: 6.1010

>NTDB_id=136763 RU84_RS01565 WP_002132301.1 338457..339458(+) (pilW) [Acinetobacter baumannii strain 6200]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=136763 RU84_RS01565 WP_002132301.1 338457..339458(+) (pilW) [Acinetobacter baumannii strain 6200]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.399

100

0.994

Multiple sequence alignment