Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AO356_RS13505 Genome accession   NZ_CP012831
Coordinates   3055039..3055404 (+) Length   121 a.a.
NCBI ID   WP_003206465.1    Uniprot ID   A0ABM6R9F4
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3050039..3060404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS13475 (AO356_13455) pyrR 3050635..3051141 (-) 507 WP_060740208.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  AO356_RS13480 (AO356_13460) ruvX 3051227..3051664 (-) 438 WP_003177497.1 Holliday junction resolvase RuvX -
  AO356_RS13485 (AO356_13465) - 3051664..3052233 (-) 570 WP_053126215.1 YqgE/AlgH family protein -
  AO356_RS13490 (AO356_13470) - 3052411..3053307 (-) 897 WP_060740209.1 energy transducer TonB -
  AO356_RS13495 (AO356_13475) gshB 3053384..3054337 (-) 954 WP_060740210.1 glutathione synthase -
  AO356_RS13500 (AO356_13480) pilG 3054562..3054990 (+) 429 WP_060740211.1 response regulator Regulator
  AO356_RS13505 (AO356_13485) pilH 3055039..3055404 (+) 366 WP_003206465.1 twitching motility response regulator PilH Machinery gene
  AO356_RS13510 (AO356_13490) - 3055415..3055954 (+) 540 WP_060740212.1 chemotaxis protein CheW -
  AO356_RS13515 (AO356_13495) - 3056113..3058176 (+) 2064 WP_060740213.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13224.19 Da        Isoelectric Point: 5.1588

>NTDB_id=136740 AO356_RS13505 WP_003206465.1 3055039..3055404(+) (pilH) [Pseudomonas fluorescens strain FW300-N2C3]
MARVLIVDDSPTEMYKLTGMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNGFQATRQLTKDPDTGHIPVII
ITTKDQDTDKVWGTRQGAKDYLTKPVDEETLIATLNKVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=136740 AO356_RS13505 WP_003206465.1 3055039..3055404(+) (pilH) [Pseudomonas fluorescens strain FW300-N2C3]
ATGGCACGAGTTCTGATCGTCGATGATTCGCCGACTGAAATGTACAAACTGACCGGCATGCTGGAAAAGCACGGCCATCA
GGTCCTGAAGGCCGAGAATGGCGCCGATGGCGTGGCGCTGGCCCGCCAGGAAAAACCCGATGCGGTGCTGATGGATATCG
TCATGCCCGGCCTCAATGGTTTCCAGGCCACGCGCCAGTTGACCAAGGACCCGGACACCGGCCATATCCCGGTGATCATC
ATCACCACCAAGGATCAGGACACCGACAAGGTCTGGGGTACGCGCCAGGGGGCGAAGGACTACCTGACCAAACCGGTGGA
CGAAGAAACCCTGATCGCGACCCTGAACAAAGTGCTGGCGGGTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

37.815

98.347

0.372
  letA Legionella pneumophila str. Paris

35.484

100

0.364
  letA Legionella pneumophila strain ERS1305867

35.484

100

0.364