Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   AO356_RS03345 Genome accession   NZ_CP012831
Coordinates   741797..742132 (-) Length   111 a.a.
NCBI ID   WP_060738571.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 736797..747132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS03325 kdpF 737785..737874 (-) 90 WP_003218754.1 K(+)-transporting ATPase subunit F -
  AO356_RS03330 (AO356_03320) eat 738271..739635 (+) 1365 WP_014337249.1 ethanolamine permease -
  AO356_RS30575 - 739755..739922 (+) 168 WP_003183831.1 DUF2897 family protein -
  AO356_RS03335 (AO356_03325) - 740107..740958 (-) 852 WP_060738569.1 urea carboxylase-associated family protein -
  AO356_RS03340 (AO356_03330) - 740974..741627 (-) 654 WP_060738570.1 GntR family transcriptional regulator -
  AO356_RS03345 (AO356_03335) comE1/comEA 741797..742132 (-) 336 WP_060738571.1 ComEA family DNA-binding protein Machinery gene
  AO356_RS03350 (AO356_03340) - 742584..743486 (+) 903 WP_060738572.1 acyltransferase family protein -
  AO356_RS03355 (AO356_03345) - 743542..745536 (-) 1995 WP_060738573.1 polysaccharide biosynthesis protein -
  AO356_RS03360 (AO356_03350) - 745651..746667 (-) 1017 WP_060738574.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11640.37 Da        Isoelectric Point: 8.4395

>NTDB_id=136696 AO356_RS03345 WP_060738571.1 741797..742132(-) (comE1/comEA) [Pseudomonas fluorescens strain FW300-N2C3]
MRTGYFYSLIFALLTSASIATIAAPAVKPQTTAASPATEMTAKPQSAKVDLNGADAATLQRELLGIGEAKAKAIVAYREG
NGAFSSVEELLEVKGIGKAILDKNRDKLEVN

Nucleotide


Download         Length: 336 bp        

>NTDB_id=136696 AO356_RS03345 WP_060738571.1 741797..742132(-) (comE1/comEA) [Pseudomonas fluorescens strain FW300-N2C3]
ATGCGTACAGGCTATTTCTACTCTTTGATTTTTGCCCTTCTGACCAGCGCCTCTATAGCCACCATCGCTGCGCCGGCGGT
CAAGCCACAGACCACGGCTGCGTCGCCTGCGACGGAAATGACGGCGAAGCCGCAAAGCGCCAAGGTGGATCTCAATGGGG
CGGATGCCGCTACGTTGCAACGCGAATTATTGGGAATAGGCGAGGCCAAGGCCAAGGCAATTGTTGCATATCGTGAGGGT
AATGGAGCCTTCTCGTCGGTAGAGGAGTTGTTGGAAGTCAAGGGGATTGGCAAGGCGATCCTGGACAAGAATCGCGACAA
GCTGGAAGTGAACTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

43.75

100

0.441
  comEA Acinetobacter baylyi ADP1

37.209

100

0.432
  comEA/comE1 Glaesserella parasuis strain SC1401

43.137

91.892

0.396
  comEA Legionella pneumophila str. Paris

43.564

90.991

0.396
  comEA Legionella pneumophila strain ERS1305867

43.564

90.991

0.396