Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AO353_RS08100 Genome accession   NZ_CP012830
Coordinates   1789763..1790128 (-) Length   121 a.a.
NCBI ID   WP_019694067.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2E3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784763..1795128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO353_RS08090 (AO353_08090) - 1786966..1789026 (-) 2061 WP_054594449.1 methyl-accepting chemotaxis protein -
  AO353_RS08095 (AO353_08095) - 1789213..1789752 (-) 540 WP_054594450.1 chemotaxis protein CheW -
  AO353_RS08100 (AO353_08100) pilH 1789763..1790128 (-) 366 WP_019694067.1 twitching motility response regulator PilH Machinery gene
  AO353_RS08105 (AO353_08105) pilG 1790186..1790590 (-) 405 WP_054594451.1 twitching motility response regulator PilG Regulator
  AO353_RS08110 (AO353_08110) gshB 1790825..1791778 (+) 954 WP_054594452.1 glutathione synthase -
  AO353_RS08115 (AO353_08115) - 1791856..1792755 (+) 900 WP_054594453.1 energy transducer TonB -
  AO353_RS08120 (AO353_08120) - 1792996..1793565 (+) 570 WP_054594454.1 YqgE/AlgH family protein -
  AO353_RS08125 (AO353_08125) ruvX 1793565..1794002 (+) 438 WP_054594455.1 Holliday junction resolvase RuvX -
  AO353_RS08130 (AO353_08130) pyrR 1794098..1794604 (+) 507 WP_054594456.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13338.29 Da        Isoelectric Point: 4.9246

>NTDB_id=136606 AO353_RS08100 WP_019694067.1 1789763..1790128(-) (pilH) [Pseudomonas fluorescens strain FW300-N2E3]
MARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALARQEKPDAVLMDIVMPGLNGFQATRQLTKDPETGHIPVII
ITTKDQETDKVWGTRQGARDYLTKPVEEDTLIKTLNNVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=136606 AO353_RS08100 WP_019694067.1 1789763..1790128(-) (pilH) [Pseudomonas fluorescens strain FW300-N2E3]
ATGGCACGTATTCTGATCGTCGATGATTCGCCGACCGAAATGTACAAACTGACCGGCATGCTGGAAAAGCACGGTCACGA
AGTGTTGAAAGCCGAAAACGGTGCAGACGGTGTGGCACTGGCCCGCCAGGAAAAACCCGACGCGGTGCTGATGGACATCG
TCATGCCCGGCCTCAACGGTTTCCAGGCCACCCGCCAGCTGACCAAAGACCCGGAAACCGGGCACATCCCGGTGATCATC
ATCACCACCAAGGATCAGGAAACCGACAAGGTCTGGGGCACCCGCCAGGGCGCCAGGGACTACCTCACCAAGCCGGTGGA
AGAAGACACCCTGATCAAGACCCTGAACAACGTGCTGGCAGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment