Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RR32_RS01605 Genome accession   NZ_CP010368
Coordinates   347354..347998 (+) Length   214 a.a.
NCBI ID   WP_004711656.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342354..352998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS01585 (RR32_01590) - 342399..342731 (+) 333 WP_002051722.1 DUF7709 family protein -
  RR32_RS01590 (RR32_01595) - 342734..343558 (+) 825 WP_004884737.1 putative RNA methyltransferase -
  RR32_RS01595 (RR32_01600) ponA 343576..346134 (-) 2559 WP_039246126.1 penicillin-binding protein PBP1a -
  RR32_RS01600 (RR32_01605) comM 346296..347354 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  RR32_RS01605 (RR32_01610) pilN 347354..347998 (+) 645 WP_004711656.1 PilN domain-containing protein Machinery gene
  RR32_RS01610 (RR32_01615) pilO 347995..348735 (+) 741 WP_006581061.1 type 4a pilus biogenesis protein PilO Machinery gene
  RR32_RS01615 (RR32_01620) pilP 348746..349273 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  RR32_RS01620 (RR32_01625) pilQ 349336..351501 (+) 2166 WP_039246129.1 type IV pilus secretin PilQ Machinery gene
  RR32_RS01625 (RR32_01630) aroK 351513..352082 (+) 570 WP_002051689.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24210.66 Da        Isoelectric Point: 6.9919

>NTDB_id=136604 RR32_RS01605 WP_004711656.1 347354..347998(+) (pilN) [Acinetobacter nosocomialis strain 6411]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDAVKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=136604 RR32_RS01605 WP_004711656.1 347354..347998(+) (pilN) [Acinetobacter nosocomialis strain 6411]
ATGGCAACAATTAACTTATTACCTTGGCGTGAAGAGCTGAGGGAACAACGAAAAAAACAATTTATAACTTTATGCTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACCAAATTCAGTCGAGTAGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACGGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGTTAAGCCAGCCGTAGCGAAAGACACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.121

100

0.911
  comN Acinetobacter baylyi ADP1

72.5

93.458

0.678

Multiple sequence alignment